* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02254.20
|
1.0
|
3
|
3824
|
same-strand
|
TrkA-N domain
|
2
|
PF02080.23
|
1.0
|
3
|
3824
|
same-strand
|
TrkA-C domain
|
3
|
PF00830.21
|
1.0
|
3
|
3430
|
same-strand
|
Ribosomal L28 family
|
4
|
PF05211.14
|
1.0
|
3
|
2490
|
same-strand
|
Neuraminyllactose-binding hemagglutinin precursor (NLBH)
|
5
|
PF00953.23
|
1.0
|
3
|
1268
|
opposite-strand
|
Glycosyl transferase family 4
|
6
|
PF10555.11
|
1.0
|
3
|
1268
|
opposite-strand
|
Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
|
7
|
PF03061.24
|
1.0
|
3
|
-10
|
same-strand
|
Thioesterase superfamily
|
8
|
PF13279.8
|
0.67
|
2
|
-10.0
|
same-strand
|
Thioesterase-like superfamily
|
++ More..