* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07885.18
|
0.67
|
4
|
5066.5
|
same-strand
|
Ion channel
|
2
|
PF00083.26
|
0.67
|
4
|
3043.5
|
opposite-strand
|
Sugar (and other) transporter
|
3
|
PF08240.14
|
1.0
|
6
|
1955.0
|
same-strand
|
Alcohol dehydrogenase GroES-like domain
|
4
|
PF00107.28
|
1.0
|
6
|
1955.0
|
same-strand
|
Zinc-binding dehydrogenase
|
5
|
PF16912.7
|
1.0
|
6
|
1955.0
|
same-strand
|
Glucose dehydrogenase C-terminus
|
6
|
PF03330.20
|
1.0
|
6
|
1144.5
|
opposite-strand
|
Lytic transglycolase
|
7
|
PF14169.8
|
1.0
|
6
|
187.0
|
same-strand
|
Cold-inducible protein YdjO
|
8
|
PF12697.9
|
1.0
|
6
|
478.5
|
same-strand
|
Alpha/beta hydrolase family
|
9
|
PF03096.16
|
0.67
|
4
|
480.5
|
same-strand
|
Ndr family
|
10
|
PF13170.8
|
1.0
|
6
|
1307.5
|
same-strand
|
Protein of unknown function (DUF4003)
|
11
|
PF07731.16
|
1.0
|
6
|
2397.0
|
same-strand
|
Multicopper oxidase
|
12
|
PF00324.23
|
1.0
|
6
|
4086.0
|
same-strand
|
Amino acid permease
|
13
|
PF13520.8
|
1.0
|
6
|
4086.0
|
same-strand
|
Amino acid permease
|
14
|
PF03845.15
|
1.0
|
6
|
4086.0
|
same-strand
|
Spore germination protein
|
++ More..