* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02146.19
|
1.0
|
3
|
4200
|
same-strand
|
Sir2 family
|
2
|
PF01522.23
|
1.0
|
3
|
3326
|
opposite-strand
|
Polysaccharide deacetylase
|
3
|
PF01063.21
|
1.0
|
3
|
2192
|
same-strand
|
Amino-transferase class IV
|
4
|
PF03553.16
|
1.0
|
3
|
788
|
opposite-strand
|
Na+/H+ antiporter family
|
5
|
PF00582.28
|
1.0
|
3
|
160
|
opposite-strand
|
Universal stress protein family
|
6
|
PF00664.25
|
1.0
|
3
|
987.5
|
same-strand
|
ABC transporter transmembrane region
|
7
|
PF00005.29
|
1.0
|
3
|
987.5
|
same-strand
|
ABC transporter
|
8
|
PF13191.8
|
1.0
|
3
|
1874
|
same-strand
|
AAA ATPase domain
|
9
|
PF13460.8
|
1.0
|
3
|
3942
|
opposite-strand
|
NAD(P)H-binding
|
10
|
PF00269.22
|
1.0
|
3
|
4830
|
opposite-strand
|
Small, acid-soluble spore proteins, alpha/beta type
|
11
|
PF17277.4
|
1.0
|
3
|
5244
|
opposite-strand
|
Family of unknown function (DUF5342)
|
++ More..