Result : A1V9Q4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega) |
| NCBI Accession ID | CP000527.1 |
| Organism | Desulfovibrio vulgaris subsp. vulgaris (strain DP4) |
| Left | 179029 |
| Right | 179262 |
| Strand | - |
| Nucleotide Sequence | ATGGCACGTATTACCGTGGAAGATTGCCAGAAGCGCATCGACAACCGTTTCCTGCTCGTCCAGATGGCCATCAAGCGCGTACAGCAGTACCGCGAAGGCTACGAGCCCCTGGTGGACTCGAAGAACAAGGAAGTGGTCACCGCCCTGCGTGAGATCGCCGCCGGCAAGGTCATGCCCGAAGACCTCGCCCTGTATCGTCCCGCAGAGGGCGAGGAAATGCCCGTCGCCGAATAA |
| Sequence | MARITVEDCQKRIDNRFLLVQMAIKRVQQYREGYEPLVDSKNKEVVTALREIAAGKVMPEDLALYRPAEGEEMPVAE |
| Source of smORF | Swiss-Prot |
| Function | Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. {ECO:0000255|HAMAP-Rule:MF_00366}. |
| Pubmed ID | 19737303 |
| Domain | CDD:417484 |
| Functional Category | Others |
| Uniprot ID | A1V9Q4 |
| ORF Length (Amino Acid) | 77 |
++ More..
| Conservation Analysis |
No. of Species: 156
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3416172 | 3416405 | + | NC_017310.1 | Desulfovibrio vulgaris RCH1 |
| 2 | 2686650 | 2686889 | + | NZ_CP014229.1 | Desulfovibrio fairfieldensis |
| 3 | 859818 | 860027 | - | NC_020127.1 | Lawsonia intracellularis N343 |
| 4 | 711741 | 711968 | - | NC_016803.1 | Pseudodesulfovibrio mercurii |
| 5 | 2838492 | 2838713 | - | NC_012881.1 | Maridesulfovibrio salexigens DSM 2638 |
| 6 | 2879477 | 2879710 | + | NZ_CP046400.1 | Pseudodesulfovibrio cashew |
| 7 | 3922512 | 3922742 | + | NC_013173.1 | Desulfomicrobium baculatum DSM 4028 |
| 8 | 159611 | 159823 | - | NC_016620.1 | Halobacteriovorax marinus SJ |
| 9 | 2446796 | 2447002 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 10 | 1647302 | 1647508 | - | NC_011768.1 | Desulfatibacillum aliphaticivorans |
| 11 | 2452819 | 2453028 | - | NC_002939.5 | Geobacter sulfurreducens PCA |
| 12 | 1923611 | 1923877 | + | NZ_CP054140.1 | Desulfobulbus oligotrophicus |
| 13 | 1281912 | 1282115 | + | NZ_CP018845.1 | Herbaspirillum robiniae |
| 14 | 3485141 | 3485344 | + | NC_007908.1 | Rhodoferax ferrireducens T118 |
| 15 | 3982036 | 3982239 | + | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 16 | 1191988 | 1192191 | + | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 17 | 2293507 | 2293710 | - | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 18 | 1887054 | 1887257 | + | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 19 | 2305336 | 2305539 | - | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 20 | 569119 | 569322 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 21 | 2936714 | 2936917 | + | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 22 | 581043 | 581243 | - | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 23 | 4633383 | 4633586 | + | NZ_CP019236.1 | Rhodoferax koreense |
| 24 | 2538520 | 2538723 | - | NZ_CP027669.1 | Simplicispira suum |
| 25 | 1303985 | 1304188 | + | NZ_CP011568.3 | Pandoraea thiooxydans |
| 26 | 2928527 | 2928730 | - | NZ_CP035708.1 | Sphaerotilus natans subsp. sulfidivorans |
| 27 | 924054 | 924257 | - | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 28 | 1014784 | 1014987 | - | NZ_CP019240.1 | Rhodoferax antarcticus |
| 29 | 3508446 | 3508649 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 30 | 778132 | 778335 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 31 | 854713 | 854916 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 32 | 3328765 | 3328968 | - | NZ_CP024608.1 | Massilia violaceinigra |
| 33 | 1394753 | 1394956 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 34 | 5214028 | 5214231 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 35 | 2872156 | 2872359 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 36 | 5277687 | 5277890 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 37 | 3272779 | 3272979 | + | NZ_CP021455.1 | Comamonas serinivorans |
| 38 | 4852984 | 4853187 | + | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 39 | 3955019 | 3955222 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 40 | 3963238 | 3963441 | + | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 41 | 2395672 | 2395875 | - | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 42 | 3095224 | 3095427 | + | NZ_CP065748.1 | Delftia lacustris |
| 43 | 3183588 | 3183791 | + | NZ_CP017420.1 | Delftia tsuruhatensis |
| 44 | 1786519 | 1786722 | + | NC_007651.1 | Burkholderia thailandensis E264 |
| 45 | 1227633 | 1227836 | - | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 46 | 3313121 | 3313324 | + | NZ_CP016171.1 | Bordetella bronchialis |
| 47 | 2348126 | 2348329 | - | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 48 | 1384220 | 1384423 | + | NZ_CP009727.1 | Burkholderia mallei |
| 49 | 755495 | 755698 | + | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 50 | 1021917 | 1022120 | + | NZ_CP013398.1 | Burkholderia seminalis |
| 51 | 1025764 | 1025967 | + | NZ_CP013401.1 | Burkholderia metallica |
| 52 | 2295508 | 2295711 | + | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 53 | 1031172 | 1031375 | + | NZ_CP013450.1 | Burkholderia cenocepacia |
| 54 | 786985 | 787188 | + | NZ_CP026111.1 | Paraburkholderia terrae |
| 55 | 1205721 | 1205924 | - | NZ_CP015958.1 | Paraburkholderia caribensis |
| 56 | 1023520 | 1023723 | + | NZ_CP045235.1 | Burkholderia cepacia |
| 57 | 1036578 | 1036781 | + | NC_007510.1 | Burkholderia lata |
| 58 | 1058667 | 1058870 | + | NZ_CP020737.1 | Paraburkholderia acidophila |
| 59 | 3582669 | 3582872 | + | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 60 | 2777662 | 2777865 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 61 | 3114996 | 3115199 | - | NZ_CP024934.1 | Paraburkholderia graminis |
| 62 | 2757974 | 2758177 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 63 | 2073197 | 2073400 | + | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 64 | 3479069 | 3479272 | - | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 65 | 3887969 | 3888172 | - | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 66 | 802535 | 802738 | + | NC_021287.1 | Caballeronia insecticola |
| 67 | 3121707 | 3121910 | + | NZ_CP035900.1 | Burkholderia glumae |
| 68 | 1084704 | 1084907 | + | NZ_CP013459.1 | Burkholderia stagnalis |
| 69 | 2091660 | 2091863 | - | NZ_CP013235.1 | Collimonas arenae |
| 70 | 1902899 | 1903102 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 71 | 703900 | 704106 | - | NZ_CP060414.1 | Neisseria musculi |
| 72 | 2487054 | 2487257 | - | NZ_CP013236.1 | Collimonas pratensis |
| 73 | 3229471 | 3229674 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 74 | 1283159 | 1283362 | - | NZ_CP035503.1 | Rhodoferax sediminis |
| 75 | 1783388 | 1783594 | - | NZ_LR134533.1 | Neisseria weaveri |
| 76 | 3152939 | 3153142 | - | NZ_CP024941.1 | Paraburkholderia terricola |
| 77 | 4325391 | 4325594 | + | NZ_CP013729.1 | Roseateles depolymerans |
| 78 | 107017 | 107229 | + | NC_014207.1 | Methylotenera versatilis 301 |
| 79 | 945107 | 945310 | + | NZ_CP054626.1 | Cupriavidus gilardii |
| 80 | 1579865 | 1580068 | + | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 81 | 1046860 | 1047063 | + | NZ_CP039287.1 | Cupriavidus necator H16 |
| 82 | 198923 | 199126 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 83 | 5186605 | 5186808 | + | NZ_CP028324.1 | Massilia armeniaca |
| 84 | 47970 | 48182 | + | NC_007947.1 | Methylobacillus flagellatus KT |
| 85 | 308796 | 309002 | + | NZ_CP039886.1 | Neisseria flavescens |
| 86 | 3384879 | 3385082 | + | NZ_CP040017.1 | Massilia umbonata |
| 87 | 1138397 | 1138603 | + | NZ_CP059567.1 | Neisseria shayeganii |
| 88 | 726106 | 726309 | - | NZ_CP012943.1 | Ralstonia solanacearum |
| 89 | 1135366 | 1135569 | + | NZ_CP062803.1 | Cupriavidus basilensis |
| 90 | 689367 | 689570 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 91 | 1973479 | 1973685 | - | NZ_CP059571.1 | Neisseria bacilliformis |
| 92 | 908284 | 908487 | + | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 93 | 1282788 | 1282994 | + | NZ_CP038018.1 | Eikenella exigua |
| 94 | 627313 | 627516 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 95 | 1786264 | 1786470 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 96 | 625377 | 625583 | + | NZ_LT906482.1 | Eikenella corrodens |
| 97 | 979779 | 979982 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 98 | 714221 | 714433 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 99 | 824206 | 824409 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 100 | 195916 | 196128 | + | NC_012968.1 | Methylotenera mobilis JLW8 |
| 101 | 1141291 | 1141494 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 102 | 3489620 | 3489826 | - | NZ_CP013481.2 | Pandoraea apista |
| 103 | 2250479 | 2250682 | + | NZ_CP046904.1 | Massilia flava |
| 104 | 1926255 | 1926461 | + | NZ_CP059564.1 | Alysiella filiformis |
| 105 | 2763497 | 2763709 | - | NZ_CP017715.1 | Marinobacter salinus |
| 106 | 701941 | 702144 | - | NZ_CP051461.1 | Polaromonas vacuolata |
| 107 | 649508 | 649720 | + | NZ_CP011494.1 | Marinobacter psychrophilus |
| 108 | 538756 | 538962 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 109 | 239687 | 239893 | - | NZ_CP031699.1 | Neisseria animalis |
| 110 | 2036916 | 2037131 | + | NZ_AP018558.1 | Hydrogenophilus thermoluteolus |
| 111 | 3477190 | 3477396 | - | NZ_CP010897.2 | Pandoraea vervacti |
| 112 | 1247598 | 1247804 | + | NZ_CP059563.1 | Conchiformibius steedae |
| 113 | 3144525 | 3144731 | - | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 114 | 3397672 | 3397878 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 115 | 2020313 | 2020519 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 116 | 3155511 | 3155717 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 117 | 1254466 | 1254675 | - | NZ_CP059569.1 | Kingella oralis |
| 118 | 566424 | 566630 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 119 | 1281133 | 1281339 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 120 | 287520 | 287726 | - | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 121 | 1389958 | 1390164 | - | NZ_CP031253.1 | Neisseria lactamica |
| 122 | 2914398 | 2914604 | + | NZ_CP047385.1 | Pandoraea fibrosis |
| 123 | 611140 | 611343 | + | NZ_LT906451.1 | Legionella lansingensis |
| 124 | 274879 | 275085 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 125 | 1950116 | 1950322 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 126 | 4243693 | 4243899 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 127 | 6454038 | 6454247 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 128 | 1017141 | 1017347 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 129 | 3003793 | 3003999 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 130 | 2211121 | 2211336 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 131 | 3608515 | 3608721 | - | NZ_CP010310.2 | Pandoraea pulmonicola |
| 132 | 572721 | 572927 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 133 | 2572243 | 2572446 | - | NZ_CP016397.1 | Legionella clemsonensis |
| 134 | 665733 | 665942 | + | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 135 | 2777042 | 2777257 | - | NZ_CP029331.1 | Thauera hydrothermalis |
| 136 | 701266 | 701469 | + | NZ_LN681225.1 | Legionella hackeliae |
| 137 | 1040244 | 1040447 | + | NC_013861.1 | Legionella longbeachae NSW150 |
| 138 | 202673 | 202888 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 139 | 406787 | 406993 | - | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 140 | 1877345 | 1877551 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 141 | 183194 | 183427 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 142 | 2761258 | 2761461 | - | NZ_LN614830.1 | Tatlockia micdadei |
| 143 | 3086647 | 3086850 | + | NZ_LR134374.1 | Legionella spiritensis |
| 144 | 99285 | 99506 | + | NZ_CP053069.1 | Usitatibacter rugosus |
| 145 | 2149961 | 2150164 | - | NZ_CP038254.1 | Legionella israelensis |
| 146 | 754520 | 754729 | - | NZ_CP058952.1 | Chitinibacter fontanus |
| 147 | 2463733 | 2463939 | - | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
| 148 | 486161 | 486364 | + | NZ_CP025491.2 | Legionella sainthelensi |
| 149 | 2884177 | 2884383 | - | NZ_CP043473.1 | Chromobacterium paludis |
| 150 | 4067989 | 4068195 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 151 | 805553 | 805759 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 152 | 2076134 | 2076340 | - | NZ_CP017707.1 | Chromobacterium vaccinii |
| 153 | 2617121 | 2617327 | - | NZ_AP018738.1 | Ferriphaselus amnicola |
| 154 | 3617639 | 3617845 | + | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 155 | 2260487 | 2260690 | - | NZ_CP013742.1 | Legionella pneumophila |
| 156 | 3680709 | 3680915 | - | NZ_CP047241.1 | Aquitalea denitrificans |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010814.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01966.24 | 0.94 | 146 | 82 | same-strand | HD domain |
| 2 | PF13328.8 | 0.93 | 145 | 80 | same-strand | HD domain |
| 3 | PF04607.19 | 0.93 | 145 | 80 | same-strand | Region found in RelA / SpoT proteins |
| 4 | PF02824.23 | 0.93 | 145 | 80 | same-strand | TGS domain |
| 5 | PF13291.8 | 0.93 | 145 | 80 | same-strand | ACT domain |
| 6 | PF00625.23 | 0.93 | 145 | 61 | same-strand | Guanylate kinase |
| 7 | PF08340.13 | 0.68 | 106 | 759.0 | same-strand | Domain of unknown function (DUF1732) |
| 8 | PF03755.15 | 0.68 | 106 | 759.0 | same-strand | YicC-like family, N-terminal region |
++ More..