* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13578.8
|
1.0
|
2
|
4292.0
|
opposite-strand
|
Methyltransferase domain
|
2
|
PF00324.23
|
1.0
|
2
|
2668.0
|
opposite-strand
|
Amino acid permease
|
3
|
PF13520.8
|
1.0
|
2
|
2668.0
|
opposite-strand
|
Amino acid permease
|
4
|
PF00823.21
|
1.0
|
2
|
858.0
|
opposite-strand
|
PPE family
|
5
|
PF12484.10
|
1.0
|
2
|
858.0
|
opposite-strand
|
PPE-SVP subfamily C-terminal region
|
6
|
PF01740.23
|
1.0
|
2
|
573.0
|
same-strand
|
STAS domain
|
7
|
PF13614.8
|
1.0
|
2
|
2144.0
|
same-strand
|
AAA domain
|
8
|
PF01656.25
|
1.0
|
2
|
2144.0
|
same-strand
|
CobQ/CobB/MinD/ParA nucleotide binding domain
|
9
|
PF06564.14
|
1.0
|
2
|
2144.0
|
same-strand
|
Cellulose biosynthesis protein BcsQ
|
10
|
PF00142.20
|
1.0
|
2
|
2144.0
|
same-strand
|
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
|
11
|
PF02616.16
|
1.0
|
2
|
3004.0
|
same-strand
|
Segregation and condensation protein ScpA
|
12
|
PF04079.18
|
1.0
|
2
|
3837.0
|
same-strand
|
Segregation and condensation complex subunit ScpB
|
++ More..