* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00486.30
|
1.0
|
2
|
2539.5
|
opposite-strand
|
Transcriptional regulatory protein, C terminal
|
2
|
PF07719.19
|
1.0
|
2
|
2539.5
|
opposite-strand
|
Tetratricopeptide repeat
|
3
|
PF01464.22
|
1.0
|
2
|
2039.5
|
opposite-strand
|
Transglycosylase SLT domain
|
4
|
PF09119.12
|
1.0
|
2
|
735.0
|
same-strand
|
SicP binding
|
5
|
PF03545.15
|
1.0
|
2
|
735.0
|
same-strand
|
Yersinia virulence determinant (YopE)
|
6
|
PF05932.15
|
1.0
|
2
|
332.0
|
same-strand
|
Tir chaperone protein (CesT) family
|
7
|
PF09052.12
|
1.0
|
2
|
17.0
|
same-strand
|
SipA N-terminal domain
|
8
|
PF06511.13
|
1.0
|
2
|
2123.0
|
same-strand
|
Type III secretion systems tip complex components
|
9
|
PF09599.12
|
1.0
|
2
|
3220.5
|
same-strand
|
Salmonella-Shigella invasin protein C (IpaC SipC)
|
10
|
PF04888.14
|
1.0
|
2
|
4477.5
|
same-strand
|
Secretion system effector C (SseC) like family
|
11
|
PF16535.7
|
1.0
|
2
|
4477.5
|
same-strand
|
Type III cell invasion protein SipB
|
12
|
PF07720.14
|
1.0
|
2
|
6261.5
|
same-strand
|
Tetratricopeptide repeat
|
++ More..