Result : D3VC10
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ribosome modulation factor (RMF) |
| NCBI Accession ID | FN667742.1 |
| Organism | Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) |
| Left | 1493754 |
| Right | 1493912 |
| Strand | + |
| Nucleotide Sequence | ATGAAAAGACAAAAAAGAGACCGTTTAGCAAGAGCACTTTCCAGAGGCTATCACGCAGGCATTTTGGGACGGCCACGGGAGAATTGTCCTTATCATTCATTGGATGCTCGTTCGTATTGGTTGGGAGGATGGCGTCAGGCGAAAGAAGATCGTGTTTGA |
| Sequence | MKRQKRDRLARALSRGYHAGILGRPRENCPYHSLDARSYWLGGWRQAKEDRV |
| Source of smORF | Swiss-Prot |
| Function | During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes). {ECO:0000255|HAMAP-Rule:MF_00919}. |
| Pubmed ID | |
| Domain | CDD:420038 |
| Functional Category | Others |
| Uniprot ID | D3VC10 |
| ORF Length (Amino Acid) | 52 |
++ More..
| Conservation Analysis |
No. of Species: 251
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2218842 | 2219000 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 2 | 1759989 | 1760147 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 3 | 2828080 | 2828238 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 4 | 2113137 | 2113304 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 5 | 792196 | 792354 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 6 | 5066733 | 5066900 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 7 | 3167296 | 3167463 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 8 | 2347460 | 2347633 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 9 | 2773503 | 2773670 | - | NZ_LT615367.1 | Dickeya aquatica |
| 10 | 412727 | 412900 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 11 | 2805291 | 2805458 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 12 | 3251053 | 3251226 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 13 | 1085629 | 1085796 | - | NZ_CP009787.1 | Yersinia rohdei |
| 14 | 976744 | 976911 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 15 | 3992573 | 3992740 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 16 | 1861087 | 1861254 | + | NZ_CP043727.1 | Yersinia canariae |
| 17 | 1834591 | 1834758 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 18 | 2777451 | 2777618 | - | NZ_CP046293.1 | Yersinia intermedia |
| 19 | 1339097 | 1339264 | + | NZ_CP032487.1 | Yersinia hibernica |
| 20 | 2127960 | 2128127 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 21 | 3725170 | 3725337 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 22 | 2658154 | 2658321 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 23 | 2242839 | 2243006 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 24 | 2197233 | 2197400 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 25 | 2796032 | 2796199 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 26 | 931745 | 931912 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 27 | 1897635 | 1897802 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 28 | 3879144 | 3879311 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 29 | 1586548 | 1586715 | + | NZ_CP065534.1 | Lonsdalea populi |
| 30 | 2738557 | 2738724 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 31 | 2120422 | 2120592 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 32 | 2691739 | 2691906 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 33 | 2369537 | 2369704 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 34 | 1721091 | 1721258 | + | NZ_CP050150.1 | Hafnia alvei |
| 35 | 15378 | 15545 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 36 | 869509 | 869679 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 37 | 3451151 | 3451318 | + | NZ_CP007230.1 | Yersinia similis |
| 38 | 2921049 | 2921219 | + | NZ_CP026364.1 | Proteus hauseri |
| 39 | 1462611 | 1462778 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 40 | 1502915 | 1503082 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 41 | 3087581 | 3087751 | - | NZ_CP048796.1 | Providencia vermicola |
| 42 | 1734280 | 1734447 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 43 | 2827199 | 2827366 | - | NZ_CP025799.1 | Dickeya zeae |
| 44 | 3652916 | 3653086 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 45 | 1318512 | 1318682 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 46 | 1446902 | 1447072 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 47 | 465197 | 465364 | + | NZ_CP067057.1 | Rahnella aceris |
| 48 | 1928397 | 1928564 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 49 | 2859617 | 2859784 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 50 | 159886 | 160053 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 51 | 2919143 | 2919310 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 52 | 4795982 | 4796149 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 53 | 4055463 | 4055630 | + | NZ_CP011254.1 | Serratia fonticola |
| 54 | 4577328 | 4577495 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 55 | 2222049 | 2222219 | + | NZ_CP029736.1 | Providencia rettgeri |
| 56 | 2966990 | 2967160 | - | NZ_LS483422.1 | Providencia heimbachae |
| 57 | 4211078 | 4211245 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 58 | 777438 | 777608 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 59 | 3280408 | 3280575 | + | NZ_CP065640.1 | Serratia rubidaea |
| 60 | 4245072 | 4245248 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 61 | 3441830 | 3441997 | - | NZ_CP041247.1 | Raoultella electrica |
| 62 | 3633027 | 3633194 | + | NZ_CP026047.1 | Raoultella planticola |
| 63 | 3611783 | 3611950 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 64 | 3729949 | 3730116 | - | NZ_CP050508.1 | Raoultella terrigena |
| 65 | 3989271 | 3989438 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 66 | 1258832 | 1258999 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 67 | 2026619 | 2026786 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 68 | 3001885 | 3002049 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 69 | 1487137 | 1487304 | + | NZ_CP015581.1 | Tatumella citrea |
| 70 | 4340994 | 4341161 | + | NZ_CP049115.1 | Pantoea stewartii |
| 71 | 2976013 | 2976180 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 72 | 1700885 | 1701052 | - | NZ_CP038469.1 | Citrobacter tructae |
| 73 | 1744591 | 1744758 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 74 | 1376987 | 1377160 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 75 | 3546101 | 3546268 | + | NZ_CP053416.1 | Salmonella bongori |
| 76 | 1157629 | 1157796 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 77 | 1417380 | 1417547 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 78 | 2706802 | 2706969 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 79 | 2654208 | 2654375 | - | NZ_CP038853.1 | Pantoea vagans |
| 80 | 1393052 | 1393225 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 81 | 3192329 | 3192499 | - | NZ_CP071320.1 | Serratia ureilytica |
| 82 | 1164296 | 1164466 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 83 | 1897356 | 1897526 | + | NZ_LT906479.1 | Serratia ficaria |
| 84 | 1858294 | 1858464 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 85 | 3341483 | 3341650 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 86 | 1932963 | 1933130 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 87 | 3589116 | 3589283 | - | NZ_CP054254.1 | Klebsiella variicola |
| 88 | 2890732 | 2890899 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 89 | 3378403 | 3378570 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 90 | 1347649 | 1347816 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 91 | 1718817 | 1718984 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 92 | 3444697 | 3444864 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 93 | 1745998 | 1746165 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 94 | 3806272 | 3806439 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 95 | 2076950 | 2077126 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 96 | 1703860 | 1704033 | - | NZ_AP014635.1 | Vibrio tritonius |
| 97 | 1807268 | 1807438 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 98 | 3944117 | 3944284 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 99 | 2693422 | 2693589 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 100 | 1809304 | 1809471 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 101 | 2558914 | 2559081 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 102 | 1585245 | 1585412 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 103 | 1584474 | 1584641 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 104 | 1537241 | 1537414 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 105 | 4234061 | 4234243 | - | NZ_CP019706.1 | Pantoea alhagi |
| 106 | 3059 | 3241 | - | NZ_CP019706.1 | Pantoea alhagi |
| 107 | 3307756 | 3307923 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 108 | 3824034 | 3824201 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 109 | 1618159 | 1618341 | + | NZ_CP061511.1 | Mixta calida |
| 110 | 1695920 | 1696102 | + | NZ_CP026377.1 | Mixta gaviniae |
| 111 | 2094951 | 2095124 | + | NZ_CP040990.1 | Vibrio furnissii |
| 112 | 1666969 | 1667142 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 113 | 1951232 | 1951399 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 114 | 1515733 | 1515906 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 115 | 1264492 | 1264665 | + | NZ_AP019657.1 | Vibrio ponticus |
| 116 | 1728081 | 1728248 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 117 | 2942757 | 2942924 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 118 | 3015106 | 3015273 | - | NZ_LR134201.1 | Cedecea lapagei |
| 119 | 3235989 | 3236156 | - | NZ_CP023525.1 | Cedecea neteri |
| 120 | 2538713 | 2538880 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 121 | 2972784 | 2972951 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 122 | 1727371 | 1727544 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 123 | 598860 | 599027 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 124 | 4516661 | 4516828 | + | NZ_CP033744.1 | Citrobacter freundii |
| 125 | 1278178 | 1278351 | - | NZ_CP014035.2 | Vibrio fluvialis |
| 126 | 860418 | 860600 | + | NZ_CP028271.1 | Mixta intestinalis |
| 127 | 536631 | 536798 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 128 | 1571008 | 1571181 | + | NC_011753.2 | Vibrio atlanticus |
| 129 | 1615198 | 1615371 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 130 | 1627465 | 1627638 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 131 | 1705756 | 1705929 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 132 | 2176086 | 2176262 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 133 | 2449819 | 2449986 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 134 | 3096541 | 3096714 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 135 | 1953371 | 1953538 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 136 | 1127004 | 1127171 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 137 | 2141753 | 2141929 | + | NZ_CP031769.1 | Salinimonas sediminis |
| 138 | 646712 | 646888 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 139 | 1545775 | 1545948 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 140 | 1629258 | 1629425 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 141 | 2180537 | 2180710 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 142 | 3405671 | 3405838 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 143 | 1979493 | 1979666 | - | NZ_CP009467.1 | Vibrio harveyi |
| 144 | 1858546 | 1858719 | + | NZ_CP046268.1 | Vibrio spartinae |
| 145 | 2635222 | 2635398 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 146 | 2870815 | 2870982 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 147 | 2030470 | 2030643 | + | NC_013456.1 | Vibrio antiquarius |
| 148 | 2735584 | 2735751 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 149 | 82357 | 82524 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 150 | 1015715 | 1015882 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 151 | 1027350 | 1027517 | + | NZ_AP014857.1 | Escherichia albertii |
| 152 | 1145187 | 1145354 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 153 | 3921191 | 3921367 | + | NZ_CP036200.1 | Shewanella maritima |
| 154 | 1682527 | 1682694 | + | NZ_LR134340.1 | Escherichia marmotae |
| 155 | 1441286 | 1441462 | - | NZ_CP033078.1 | Vibrio zhugei |
| 156 | 1898641 | 1898814 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 157 | 2995932 | 2996108 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 158 | 2921959 | 2922126 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 159 | 2350411 | 2350587 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 160 | 2089384 | 2089560 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 161 | 1545134 | 1545307 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 162 | 1607538 | 1607711 | - | NZ_CP030788.1 | Vibrio campbellii |
| 163 | 1448250 | 1448423 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 164 | 49838 | 50011 | + | NZ_CP019959.1 | Vibrio owensii |
| 165 | 439020 | 439193 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 166 | 2596719 | 2596895 | - | NZ_CP028897.1 | Dongshaea marina |
| 167 | 419765 | 419938 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 168 | 1002782 | 1002949 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 169 | 1940985 | 1941161 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 170 | 1233588 | 1233761 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 171 | 1578264 | 1578437 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 172 | 2125183 | 2125359 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 173 | 1531901 | 1532071 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 174 | 2316111 | 2316281 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 175 | 3182659 | 3182826 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 176 | 2151197 | 2151373 | + | NC_014012.1 | Shewanella violacea DSS12 |
| 177 | 1869832 | 1870002 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 178 | 2711572 | 2711748 | - | NZ_CP046378.1 | Shewanella algae |
| 179 | 1251211 | 1251381 | - | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 180 | 1599925 | 1600092 | + | NC_015968.1 | Enterobacter soli |
| 181 | 3104060 | 3104233 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 182 | 1390011 | 1390184 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 183 | 2292237 | 2292413 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 184 | 928414 | 928590 | + | NZ_CP044060.1 | Aeromonas veronii |
| 185 | 1241703 | 1241879 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 186 | 1133932 | 1134108 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 187 | 2427418 | 2427594 | - | NZ_AP022188.1 | Aeromonas media |
| 188 | 2384933 | 2385109 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 189 | 2245263 | 2245439 | + | NZ_CP008849.1 | Alteromonas australica |
| 190 | 2891677 | 2891847 | - | NZ_CP014056.2 | Grimontia hollisae |
| 191 | 2923908 | 2924084 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 192 | 1242857 | 1243033 | + | NZ_CP014322.1 | Alteromonas addita |
| 193 | 1836243 | 1836419 | + | NC_015554.1 | Alteromonas naphthalenivorans |
| 194 | 1467732 | 1467905 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 195 | 1864158 | 1864328 | + | NZ_LR134494.1 | Serratia quinivorans |
| 196 | 3133614 | 3133790 | - | NC_016901.1 | Shewanella baltica OS678 |
| 197 | 4211720 | 4211893 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 198 | 1575230 | 1575406 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 199 | 1813751 | 1813927 | + | NZ_CP020472.1 | Shewanella japonica |
| 200 | 4172759 | 4172926 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 201 | 1827634 | 1827801 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 202 | 1434630 | 1434806 | - | NZ_CP041783.1 | Shewanella donghaensis |
| 203 | 1833443 | 1833619 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 204 | 1961055 | 1961231 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 205 | 1259491 | 1259664 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 206 | 2373357 | 2373533 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 207 | 2838277 | 2838453 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 208 | 1524391 | 1524567 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 209 | 1645543 | 1645710 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 210 | 1630279 | 1630446 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 211 | 1609403 | 1609570 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 212 | 3152656 | 3152823 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 213 | 920763 | 920930 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 214 | 1655034 | 1655201 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 215 | 814585 | 814752 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 216 | 1842685 | 1842852 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 217 | 1786503 | 1786673 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 218 | 2609119 | 2609298 | + | NZ_CP037952.1 | Parashewanella spongiae |
| 219 | 635500 | 635673 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 220 | 1788093 | 1788263 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 221 | 1510813 | 1510986 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 222 | 5115161 | 5115334 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 223 | 3403877 | 3404050 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 224 | 2318279 | 2318452 | + | NZ_CP034759.1 | Litorilituus sediminis |
| 225 | 1027852 | 1028025 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 226 | 2946152 | 2946328 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 227 | 791356 | 791532 | + | NZ_LS483250.1 | Moritella yayanosii |
| 228 | 1133257 | 1133430 | - | NZ_CP035688.1 | Vibrio metoecus |
| 229 | 1446062 | 1446235 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 230 | 253974 | 254144 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 231 | 3751794 | 3751964 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 232 | 1710259 | 1710429 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 233 | 1655824 | 1655994 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 234 | 2052330 | 2052506 | - | NC_016041.1 | Glaciecola nitratireducens FR1064 |
| 235 | 1411253 | 1411429 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 236 | 1887738 | 1887908 | - | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 237 | 2940977 | 2941153 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 238 | 3190501 | 3190677 | - | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 239 | 1569068 | 1569238 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 240 | 1756165 | 1756335 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 241 | 1989520 | 1989690 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 242 | 1496470 | 1496646 | + | NZ_CP041036.1 | Shewanella polaris |
| 243 | 1449399 | 1449575 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 244 | 3503423 | 3503599 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 245 | 1847448 | 1847618 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 246 | 1758499 | 1758669 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 247 | 1773092 | 1773262 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 248 | 1876973 | 1877149 | + | NZ_CP037951.1 | Parashewanella tropica |
| 249 | 1392992 | 1393162 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 250 | 1763328 | 1763501 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 251 | 2006708 | 2006887 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 252 | 3424841 | 3425011 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 253 | 1383474 | 1383650 | + | NC_006512.1 | Idiomarina loihiensis L2TR |
| 254 | 1350315 | 1350473 | + | NZ_CP022355.1 | Paraphotobacterium marinum |
| 255 | 1752684 | 1752860 | - | NZ_CP040449.1 | Aeromonas simiae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP009787.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06303.14 | 0.6 | 151 | 2607 | same-strand | MatP N-terminal domain |
| 2 | PF07977.15 | 0.88 | 222 | 95.0 | opposite-strand | FabA-like domain |
| 3 | PF00005.29 | 0.93 | 233 | 3731.0 | same-strand | ABC transporter |
| 4 | PF16326.7 | 0.92 | 231 | 3731 | same-strand | ABC transporter C-terminal domain |
| 5 | PF12848.9 | 0.92 | 231 | 3731 | same-strand | ABC transporter |
| 6 | PF13191.8 | 0.68 | 171 | 3733 | same-strand | AAA ATPase domain |
| 7 | PF01170.20 | 0.9 | 225 | 5650.0 | same-strand | Putative RNA methylase family UPF0020 |
| 8 | PF02926.19 | 0.8 | 202 | 5651 | same-strand | THUMP domain |
| 9 | PF13649.8 | 0.67 | 167 | 5652.0 | same-strand | Methyltransferase domain |
| 10 | PF13401.8 | 0.65 | 162 | 3730.0 | same-strand | AAA domain |
++ More..