Result : C6E4P9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | CP001661.1 |
| Organism | Geobacter sp. (strain M21) |
| Left | 3847222 |
| Right | 3847410 |
| Strand | - |
| Nucleotide Sequence | ATGAAGGCTAATGAACTGAAAAACGCGACGGCTGCTGAGCTCGAGGCCAAAGGCACGGAGCTGACCAAGGAACTCTTCAACGTGAAGTTTCAGCTTCACACCGGGCGGCTGGAAAACACTTCCAAGGTTTCCAACCTGAGGAAGGATATCGCCCGCGTGAAGACCATACTCCGTGAAAAGAGAGGCTAA |
| Sequence | MKANELKNATAAELEAKGTELTKELFNVKFQLHTGRLENTSKVSNLRKDIARVKTILREKRG |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | C6E4P9 |
| ORF Length (Amino Acid) | 62 |
++ More..
| Conservation Analysis |
No. of Species: 361
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1102231 | 1102419 | + | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 2 | 3683749 | 3683937 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 3 | 1277548 | 1277736 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 4 | 3124836 | 3125024 | - | NC_002939.5 | Geobacter sulfurreducens PCA |
| 5 | 704480 | 704668 | + | NC_007517.1 | Geobacter metallireducens GS-15 |
| 6 | 747882 | 748070 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 7 | 4012000 | 4012188 | - | NC_011979.1 | Geobacter daltonii FRC-32 |
| 8 | 1399519 | 1399707 | + | NC_010814.1 | Geobacter lovleyi SZ |
| 9 | 1652487 | 1652675 | - | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 10 | 3108211 | 3108399 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 11 | 726824 | 727012 | + | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 12 | 2697272 | 2697460 | - | NZ_CP010311.1 | Geoalkalibacter subterraneus |
| 13 | 6055463 | 6055663 | + | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 14 | 73445 | 73636 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 15 | 271422 | 271619 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 16 | 160875 | 161072 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 17 | 3096340 | 3096540 | - | NZ_CP014342.1 | Geobacillus subterraneus |
| 18 | 6313346 | 6313546 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 19 | 285367 | 285564 | - | NZ_CP026363.1 | Brevibacillus agri |
| 20 | 1937442 | 1937648 | - | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 21 | 4573303 | 4573506 | - | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 22 | 1280168 | 1280362 | - | NZ_CP037940.1 | Weissella cryptocerci |
| 23 | 225578 | 225778 | - | NZ_CP034437.1 | Paenibacillus albus |
| 24 | 4222306 | 4222506 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 25 | 4740022 | 4740222 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 26 | 3631379 | 3631576 | - | NZ_CP033433.1 | Cohnella candidum |
| 27 | 138039 | 138239 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 28 | 170519 | 170719 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
| 29 | 146504 | 146704 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
| 30 | 3268666 | 3268866 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 31 | 345945 | 346151 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 32 | 132214 | 132414 | + | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 33 | 2825866 | 2826066 | + | NZ_CP061470.1 | Geobacillus zalihae |
| 34 | 140921 | 141121 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 35 | 2263947 | 2264147 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 36 | 479266 | 479472 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 37 | 150875 | 151075 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 38 | 4043688 | 4043891 | - | NZ_CP016020.1 | Bacillus weihaiensis |
| 39 | 2326349 | 2326546 | + | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 40 | 1638674 | 1638874 | + | NZ_CP034248.1 | Paenibacillus lentus |
| 41 | 1631193 | 1631396 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 42 | 132617 | 132817 | + | NZ_CP024035.1 | Priestia aryabhattai |
| 43 | 3790457 | 3790657 | - | NZ_CP011937.1 | Bacillus velezensis |
| 44 | 275912 | 276112 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 45 | 139865 | 140065 | + | NZ_CP048852.1 | Bacillus tequilensis |
| 46 | 140884 | 141084 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 47 | 139625 | 139825 | + | NZ_CP051464.1 | Bacillus mojavensis |
| 48 | 139751 | 139951 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 49 | 109645 | 109845 | + | NZ_CP013984.1 | Bacillus inaquosorum |
| 50 | 1869577 | 1869777 | - | NZ_CP029364.1 | Bacillus halotolerans |
| 51 | 139924 | 140124 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 52 | 135171 | 135374 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 53 | 1942057 | 1942257 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 54 | 145633 | 145836 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 55 | 254493 | 254696 | + | NZ_CP053989.1 | Niallia circulans |
| 56 | 224366 | 224563 | + | NC_010718.1 | Natranaerobius thermophilus JW/NM-WN-LF |
| 57 | 3453531 | 3453731 | + | NZ_CP008876.1 | Terribacillus goriensis |
| 58 | 2694784 | 2694987 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 59 | 4179444 | 4179647 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 60 | 2117966 | 2118166 | + | NZ_CP015108.1 | Sporosarcina ureae |
| 61 | 145929 | 146129 | + | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 62 | 1488434 | 1488634 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 63 | 113204 | 113404 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 64 | 1405500 | 1405700 | - | NZ_CP043404.1 | Bacillus safensis |
| 65 | 334989 | 335189 | + | NZ_CP014616.1 | Sporosarcina psychrophila |
| 66 | 2577651 | 2577854 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 67 | 2436116 | 2436319 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 68 | 4842169 | 4842369 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 69 | 1370395 | 1370595 | - | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 70 | 2610152 | 2610349 | + | NZ_CP011388.1 | Paenibacillus swuensis |
| 71 | 141770 | 141970 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 72 | 1752290 | 1752490 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 73 | 125979 | 126182 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 74 | 173353 | 173556 | + | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 75 | 5699229 | 5699426 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 76 | 3986684 | 3986881 | + | NZ_CP016809.1 | Paenibacillus ihbetae |
| 77 | 5132786 | 5132986 | - | NZ_CP013023.1 | Paenibacillus bovis |
| 78 | 3620039 | 3620239 | - | NZ_CP014167.1 | Paenibacillus yonginensis |
| 79 | 132279 | 132452 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 80 | 142923 | 143126 | + | NZ_CP012024.1 | Bacillus smithii |
| 81 | 6128453 | 6128650 | - | NZ_AP019400.1 | Cohnella abietis |
| 82 | 2574412 | 2574612 | - | NZ_CP011361.2 | Salimicrobium jeotgali |
| 83 | 2370437 | 2370640 | - | NC_018664.1 | Gottschalkia acidurici 9a |
| 84 | 3723629 | 3723832 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 85 | 1197906 | 1198106 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 86 | 155853 | 156053 | + | NZ_CP041666.1 | Radiobacillus deserti |
| 87 | 2344065 | 2344268 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 88 | 151793 | 151993 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 89 | 52654 | 52854 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 90 | 148351 | 148551 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 91 | 184965 | 185165 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 92 | 161055 | 161258 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 93 | 4581909 | 4582109 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 94 | 56635 | 56835 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 95 | 141190 | 141393 | + | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 96 | 134606 | 134806 | + | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 97 | 4390963 | 4391160 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 98 | 190498 | 190707 | - | NZ_CP046314.1 | Gemella morbillorum |
| 99 | 1758715 | 1758924 | - | NZ_LR134484.1 | Gemella haemolysans |
| 100 | 3725089 | 3725289 | + | NZ_CP035492.1 | Paenibacillus protaetiae |
| 101 | 2099865 | 2100062 | + | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 102 | 2304374 | 2304571 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 103 | 1822984 | 1823190 | - | NZ_CP035130.1 | Gudongella oleilytica |
| 104 | 143151 | 143351 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 105 | 3989464 | 3989661 | - | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 106 | 563994 | 564197 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 107 | 4130937 | 4131137 | - | NZ_CP031223.1 | Psychrobacillus glaciei |
| 108 | 1848170 | 1848334 | + | NZ_CP042410.1 | Leuconostoc citreum |
| 109 | 1713422 | 1713586 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 110 | 1524041 | 1524205 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 111 | 1286539 | 1286703 | + | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 112 | 164846 | 165010 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 113 | 1963296 | 1963460 | - | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 114 | 134198 | 134398 | + | NZ_CP016540.2 | Planococcus versutus |
| 115 | 143858 | 144058 | + | NZ_CP016538.2 | Planococcus maritimus |
| 116 | 143699 | 143899 | + | NZ_CP059540.1 | Planococcus maritimus |
| 117 | 166360 | 166560 | + | NZ_CP016543.2 | Planococcus donghaensis |
| 118 | 1616306 | 1616506 | - | NZ_CP013661.2 | Planococcus kocurii |
| 119 | 146371 | 146571 | + | NZ_CP019401.1 | Planococcus faecalis |
| 120 | 3332017 | 3332217 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 121 | 150886 | 151086 | + | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 122 | 2949026 | 2949223 | - | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 123 | 3440736 | 3440939 | - | NZ_CP012502.1 | Bacillus beveridgei |
| 124 | 781436 | 781633 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 125 | 314767 | 314964 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 126 | 1226777 | 1226983 | - | NZ_LR134523.1 | Peptoniphilus ivorii |
| 127 | 1751581 | 1751778 | + | NZ_CP043611.1 | Paenibacillus antarcticus |
| 128 | 805139 | 805303 | - | NZ_CP042374.1 | Leuconostoc carnosum |
| 129 | 1291034 | 1291225 | + | NZ_CP023643.1 | Brochothrix thermosphacta |
| 130 | 2791057 | 2791257 | + | NZ_CP011058.1 | Paenibacillus beijingensis |
| 131 | 964274 | 964468 | + | NZ_CP014159.1 | Aerococcus christensenii |
| 132 | 1552940 | 1553134 | - | NC_014758.1 | Calditerrivibrio nitroreducens DSM 19672 |
| 133 | 4496811 | 4497011 | - | NZ_CP006837.1 | Lysinibacillus varians |
| 134 | 247718 | 247918 | + | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 135 | 203905 | 204105 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 136 | 175199 | 175399 | + | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 137 | 3819015 | 3819218 | - | NZ_CP009687.1 | Clostridium aceticum |
| 138 | 1059150 | 1059350 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 139 | 1146120 | 1146314 | + | NZ_CP053187.1 | Turicibacter sanguinis |
| 140 | 1808021 | 1808221 | - | NZ_CP041217.1 | Saccharibacillus brassicae |
| 141 | 124152 | 124352 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 142 | 244239 | 244451 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 143 | 204585 | 204776 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 144 | 1532582 | 1532779 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 145 | 664738 | 664935 | + | NZ_CP020028.1 | Paenibacillus kribbensis |
| 146 | 4687785 | 4687985 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 147 | 5017407 | 5017604 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 148 | 5294858 | 5295055 | - | NZ_CP009288.1 | Paenibacillus durus |
| 149 | 1522307 | 1522468 | - | NZ_CP014161.1 | Aerococcus urinae |
| 150 | 1137133 | 1137324 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 151 | 146226 | 146426 | + | NZ_CP016537.2 | Planococcus halocryophilus |
| 152 | 742501 | 742698 | + | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 153 | 4366290 | 4366487 | - | NZ_CP022657.1 | Tumebacillus algifaecis |
| 154 | 1791557 | 1791754 | + | NZ_CP021434.1 | Tumebacillus avium |
| 155 | 6154748 | 6154945 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 156 | 1126374 | 1126571 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 157 | 6433045 | 6433242 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 158 | 1148700 | 1148897 | - | NZ_CP068595.1 | Paenibacillus sonchi |
| 159 | 7133967 | 7134164 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 160 | 7397918 | 7398115 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 161 | 6279740 | 6279937 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 162 | 111312 | 111521 | + | NZ_CP019573.1 | Abyssicoccus albus |
| 163 | 2979100 | 2979300 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 164 | 2539138 | 2539338 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 165 | 1986691 | 1986903 | + | NZ_CP065729.1 | Macrococcus caseolyticus |
| 166 | 242370 | 242582 | + | NZ_CP047361.1 | Macrococcus canis |
| 167 | 327031 | 327243 | + | NZ_CP054482.1 | Macrococcus bohemicus |
| 168 | 2121222 | 2121413 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 169 | 426031 | 426225 | - | NZ_CP018888.1 | Amylolactobacillus amylophilus DSM 20533 = JCM 1125 |
| 170 | 396321 | 396509 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 171 | 1474246 | 1474443 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 172 | 1959835 | 1960032 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 173 | 434691 | 434891 | + | NZ_CP017560.1 | Sporosarcina ureilytica |
| 174 | 6389280 | 6389477 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 175 | 143230 | 143430 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 176 | 1470367 | 1470558 | - | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 177 | 271049 | 271258 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 178 | 2692696 | 2692896 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 179 | 1438405 | 1438611 | - | NZ_LR134524.1 | Peptoniphilus harei |
| 180 | 1671213 | 1671416 | - | NZ_LT906470.1 | Veillonella rodentium |
| 181 | 1613467 | 1613670 | - | NZ_AP022321.1 | Veillonella nakazawae |
| 182 | 1670063 | 1670266 | - | NZ_LR134375.1 | Veillonella dispar |
| 183 | 1729730 | 1729933 | - | NZ_LR778174.1 | Veillonella parvula |
| 184 | 51665 | 51868 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 185 | 652672 | 652884 | + | NZ_CP014176.1 | Clostridium argentinense |
| 186 | 980087 | 980296 | + | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 187 | 574131 | 574325 | - | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 188 | 145526 | 145729 | + | NZ_AP021853.1 | Sporolactobacillus terrae |
| 189 | 2772301 | 2772498 | - | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 190 | 146530 | 146733 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 191 | 2171368 | 2171568 | - | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 192 | 636694 | 636900 | + | NZ_CP009761.1 | Parvimonas micra |
| 193 | 167930 | 168130 | - | NZ_CP022437.1 | Virgibacillus necropolis |
| 194 | 48200 | 48412 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 195 | 8373599 | 8373799 | - | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 196 | 1667657 | 1667854 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 197 | 3074540 | 3074752 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 198 | 2076155 | 2076358 | - | NZ_CP035485.1 | Salicibibacter halophilus |
| 199 | 239759 | 239947 | + | NZ_LS483306.1 | Enterococcus cecorum |
| 200 | 66514 | 66702 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 201 | 71014 | 71202 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 202 | 73621 | 73809 | + | NZ_CP065211.1 | Enterococcus lactis |
| 203 | 2430066 | 2430254 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 204 | 586054 | 586242 | - | NZ_CP023011.2 | Enterococcus hirae |
| 205 | 3161873 | 3162061 | + | NZ_CP018061.1 | Enterococcus mundtii |
| 206 | 257222 | 257410 | + | NC_020995.1 | Enterococcus casseliflavus EC20 |
| 207 | 498443 | 498637 | + | NC_015672.1 | Flexistipes sinusarabici DSM 4947 |
| 208 | 249478 | 249681 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 209 | 1775646 | 1775837 | - | NZ_CP013988.1 | Aerococcus urinaeequi |
| 210 | 427616 | 427807 | + | NZ_CP014164.1 | Aerococcus viridans |
| 211 | 1098305 | 1098499 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 212 | 2069078 | 2069287 | - | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 213 | 131829 | 132029 | + | NZ_CP024109.1 | Bacillus cytotoxicus |
| 214 | 4988451 | 4988651 | - | NZ_CP040336.1 | Bacillus luti |
| 215 | 125522 | 125722 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 216 | 130965 | 131165 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 217 | 131167 | 131367 | + | NC_011725.1 | Bacillus cereus B4264 |
| 218 | 130886 | 131086 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 219 | 357549 | 357752 | + | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 220 | 2253303 | 2253506 | - | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 221 | 433736 | 433939 | + | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 222 | 2135708 | 2135914 | - | NZ_CP029256.1 | Christensenella minuta |
| 223 | 1939593 | 1939802 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 224 | 2006920 | 2007129 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 225 | 240256 | 240468 | + | NC_008593.1 | Clostridium novyi NT |
| 226 | 2218936 | 2219145 | + | NZ_LT828648.1 | Nitrospira japonica |
| 227 | 1841202 | 1841405 | - | NC_017455.1 | Halanaerobium praevalens DSM 2228 |
| 228 | 36728 | 36934 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 229 | 310966 | 311121 | + | NZ_CP027563.1 | Weissella confusa |
| 230 | 1535010 | 1535210 | - | NZ_CP053856.1 | Rhizobium pusense |
| 231 | 132555 | 132758 | + | NZ_LS483476.1 | Lederbergia lentus |
| 232 | 2108439 | 2108642 | - | NC_014654.1 | Halanaerobium hydrogeniformans |
| 233 | 793025 | 793219 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 234 | 1804501 | 1804698 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 235 | 202312 | 202515 | + | NC_019978.1 | Halobacteroides halobius DSM 5150 |
| 236 | 418891 | 419100 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 237 | 184540 | 184740 | + | NC_014378.1 | Acetohalobium arabaticum DSM 5501 |
| 238 | 2290089 | 2290298 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 239 | 1274294 | 1274491 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 240 | 1845327 | 1845527 | + | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 241 | 1318653 | 1318859 | - | NZ_LT635480.1 | Ndongobacter massiliensis |
| 242 | 401942 | 402136 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 243 | 1808604 | 1808810 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 244 | 857433 | 857621 | + | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 245 | 1015649 | 1015849 | - | NZ_CP046908.1 | Stappia indica |
| 246 | 104723 | 104875 | + | NZ_CP017326.1 | Weissella soli |
| 247 | 506528 | 506722 | + | NZ_CP016843.1 | Carnobacterium divergens |
| 248 | 753892 | 754089 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 249 | 1368713 | 1368907 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 250 | 85979 | 86182 | + | NZ_CP014150.1 | Paeniclostridium sordellii |
| 251 | 354918 | 355115 | + | NZ_AP019750.1 | Lactobacillus delbrueckii subsp. delbrueckii |
| 252 | 2401899 | 2402093 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 253 | 129337 | 129540 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 254 | 1536143 | 1536343 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 255 | 1446033 | 1446233 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 256 | 151270 | 151470 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 257 | 282422 | 282616 | - | NZ_CP012294.1 | Pediococcus damnosus |
| 258 | 516835 | 517029 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 259 | 3244763 | 3244969 | - | NZ_CP065915.1 | Pelagovum pacificum |
| 260 | 1682634 | 1682837 | + | NZ_AP014945.1 | Caldimicrobium thiodismutans |
| 261 | 4497506 | 4497718 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 262 | 2101434 | 2101631 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 263 | 146618 | 146812 | - | NZ_CP019323.1 | Companilactobacillus allii |
| 264 | 270980 | 271192 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 265 | 184145 | 184357 | + | NZ_CP034118.1 | Staphylospora marina |
| 266 | 1422325 | 1422519 | - | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 267 | 530585 | 530740 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 268 | 3231994 | 3232185 | - | NC_014365.1 | Desulfarculus baarsii DSM 2075 |
| 269 | 1654562 | 1654750 | - | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
| 270 | 1925459 | 1925641 | - | NC_014632.1 | Ilyobacter polytropus DSM 2926 |
| 271 | 2216890 | 2217096 | - | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 272 | 1121541 | 1121747 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 273 | 1449468 | 1449656 | - | NC_022538.1 | Acholeplasma palmae J233 |
| 274 | 1565174 | 1565368 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 275 | 3755126 | 3755329 | - | NC_014624.2 | Eubacterium callanderi |
| 276 | 1380850 | 1381053 | + | NZ_CP019962.1 | Eubacterium limosum |
| 277 | 754885 | 755091 | - | NZ_CP053988.1 | Abiotrophia defectiva |
| 278 | 3562663 | 3562863 | - | NZ_CP041636.1 | Ferrovibrio terrae |
| 279 | 2629323 | 2629523 | - | NZ_CP054027.1 | Rhizobium hidalgonense |
| 280 | 1352245 | 1352445 | + | NZ_CP034998.1 | Rhizobium acidisoli |
| 281 | 782158 | 782358 | - | NZ_CP054021.1 | Rhizobium indicum |
| 282 | 50803 | 51000 | + | NC_014833.1 | Ruminococcus albus 7 = DSM 20455 |
| 283 | 394355 | 394552 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 284 | 381173 | 381373 | - | NZ_CP040818.1 | Paraoceanicella profunda |
| 285 | 2262478 | 2262690 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 286 | 3261328 | 3261528 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 287 | 3617834 | 3618034 | + | NZ_CP071454.1 | Rhizobium lentis |
| 288 | 2021059 | 2021253 | - | NZ_CP040736.1 | Companilactobacillus futsaii |
| 289 | 290274 | 290480 | + | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 290 | 1737518 | 1737718 | + | NZ_CP020906.1 | Rhizobium etli |
| 291 | 1785827 | 1786027 | + | NZ_CP013500.1 | Rhizobium esperanzae |
| 292 | 1786816 | 1787016 | + | NZ_CP071604.1 | Rhizobium binae |
| 293 | 1781814 | 1782014 | + | NZ_CP013532.1 | Rhizobium phaseoli |
| 294 | 2018755 | 2018955 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 295 | 1627079 | 1627279 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 296 | 72410 | 72610 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 297 | 2868068 | 2868268 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 298 | 565459 | 565614 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 299 | 339884 | 340078 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 300 | 365042 | 365233 | - | NZ_CP040098.1 | Desulfoglaeba alkanexedens ALDC |
| 301 | 295175 | 295372 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 302 | 358394 | 358591 | + | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 303 | 398170 | 398367 | + | NZ_CP059829.1 | Lactobacillus ultunensis |
| 304 | 551250 | 551444 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 305 | 1065760 | 1065954 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 306 | 644141 | 644347 | - | NZ_CP024422.1 | Paracoccus yeei |
| 307 | 395805 | 396002 | + | NC_013943.1 | Denitrovibrio acetiphilus DSM 12809 |
| 308 | 444577 | 444771 | + | NZ_AP017378.1 | Desulfovibrio ferrophilus |
| 309 | 1271017 | 1271217 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 310 | 181881 | 182036 | + | NZ_CP061835.1 | Weissella viridescens |
| 311 | 1260685 | 1260879 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 312 | 1662518 | 1662724 | - | NZ_CP025583.1 | Paracoccus jeotgali |
| 313 | 814928 | 815125 | - | NZ_CP014163.1 | Aerococcus urinaehominis |
| 314 | 448459 | 448653 | + | NZ_CP012559.1 | Companilactobacillus heilongjiangensis |
| 315 | 454289 | 454483 | + | NZ_CP017996.1 | Companilactobacillus crustorum |
| 316 | 1711651 | 1711845 | - | NZ_CP049366.1 | Companilactobacillus pabuli |
| 317 | 2095473 | 2095667 | - | NZ_CP017702.1 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 |
| 318 | 1401188 | 1401373 | + | NC_017310.1 | Desulfovibrio vulgaris RCH1 |
| 319 | 975014 | 975214 | - | NC_020300.1 | Bartonella australis Aust/NH1 |
| 320 | 3676449 | 3676655 | - | NC_011831.1 | Chloroflexus aggregans DSM 9485 |
| 321 | 1586406 | 1586606 | + | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 322 | 1005048 | 1005242 | - | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 323 | 283338 | 283550 | + | NZ_CP014204.2 | Clostridium baratii |
| 324 | 1440165 | 1440359 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 325 | 1388394 | 1388588 | - | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 326 | 1563886 | 1564080 | - | NZ_CP053421.1 | Pediococcus acidilactici |
| 327 | 223396 | 223608 | + | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 328 | 1398805 | 1399011 | - | NZ_CP044534.1 | Limosilactobacillus frumenti |
| 329 | 1564044 | 1564250 | - | NZ_CP045605.1 | Limosilactobacillus reuteri |
| 330 | 1710956 | 1711162 | + | NZ_CP036532.1 | Roseitalea porphyridii |
| 331 | 2939387 | 2939584 | + | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 332 | 1510281 | 1510487 | - | NZ_CP045240.1 | Limosilactobacillus vaginalis |
| 333 | 3307349 | 3307549 | - | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 334 | 1159569 | 1159769 | + | NZ_AP018712.1 | Tepiditoga spiralis |
| 335 | 3190288 | 3190482 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 336 | 3085026 | 3085220 | - | NZ_CP022579.1 | Oryzomicrobium terrae |
| 337 | 7035917 | 7036114 | - | NZ_CP039690.1 | Phreatobacter stygius |
| 338 | 666420 | 666617 | + | NZ_CP004393.1 | Celeribacter indicus |
| 339 | 899032 | 899235 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 340 | 3137575 | 3137733 | - | NZ_LR699011.1 | Roseburia hominis |
| 341 | 3533697 | 3533909 | - | NZ_CP030775.1 | Clostridium butyricum |
| 342 | 1921963 | 1922163 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 343 | 2657622 | 2657834 | - | NZ_HG917868.1 | Clostridium bornimense |
| 344 | 1521457 | 1521666 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 345 | 249719 | 249931 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 346 | 108396 | 108572 | - | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 347 | 491235 | 491426 | + | NZ_CP017689.1 | Thalassotalea crassostreae |
| 348 | 846203 | 846406 | - | NZ_CP014327.1 | Halocynthiibacter arcticus |
| 349 | 1149607 | 1149798 | + | NZ_LR134313.1 | Neisseria canis |
| 350 | 1145864 | 1146070 | + | NC_012440.1 | Persephonella marina EX-H1 |
| 351 | 862280 | 862486 | + | NZ_LR214951.1 | Mycoplasma neurolyticum |
| 352 | 2918302 | 2918502 | - | NZ_CP041159.1 | Leisingera aquaemixtae |
| 353 | 37492 | 37656 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 354 | 2868342 | 2868533 | - | NZ_LS483250.1 | Moritella yayanosii |
| 355 | 4131288 | 4131479 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 356 | 1240138 | 1240338 | + | NC_011653.1 | Thermosipho africanus TCF52B |
| 357 | 2452409 | 2452603 | + | NZ_CP059467.1 | Aromatoleum bremense |
| 358 | 1780916 | 1781122 | - | NC_013939.1 | Deferribacter desulfuricans SSM1 |
| 359 | 1199851 | 1200042 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 360 | 1896208 | 1896402 | + | NZ_CP018839.1 | Thauera chlorobenzoica |
| 361 | 2907834 | 2908028 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 362 | 366385 | 366576 | + | NZ_CP040602.1 | Thiomicrorhabdus sediminis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011146.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03947.20 | 0.97 | 351 | 1796.0 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 2 | PF00181.25 | 0.97 | 351 | 1796.0 | same-strand | Ribosomal Proteins L2, RNA binding domain |
| 3 | PF00203.23 | 0.98 | 355 | 1471.0 | same-strand | Ribosomal protein S19 |
| 4 | PF00237.21 | 0.98 | 353 | 1106.0 | same-strand | Ribosomal protein L22p/L17e |
| 5 | PF00189.22 | 0.99 | 357 | 427.0 | same-strand | Ribosomal protein S3, C-terminal domain |
| 6 | PF07650.19 | 0.99 | 357 | 427.0 | same-strand | KH domain |
| 7 | PF00252.20 | 0.99 | 358 | -10 | same-strand | Ribosomal protein L16p/L10e |
| 8 | PF00366.22 | 1.0 | 360 | 23 | same-strand | Ribosomal protein S17 |
| 9 | PF00238.21 | 0.99 | 359 | 330.0 | same-strand | Ribosomal protein L14p/L23e |
| 10 | PF17136.6 | 0.96 | 348 | 735 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 11 | PF00467.31 | 0.97 | 349 | 735.0 | same-strand | KOW motif |
| 12 | PF00673.23 | 1.0 | 360 | 1074 | same-strand | ribosomal L5P family C-terminus |
| 13 | PF00281.21 | 1.0 | 361 | 1073.5 | same-strand | Ribosomal protein L5 |
| 14 | PF00253.23 | 0.8 | 290 | 1636 | same-strand | Ribosomal protein S14p/S29e |
++ More..