ProsmORF-pred
Result : C6E2G9
Protein Information
Information Type Description
Protein name 50S ribosomal protein L28
NCBI Accession ID CP001661.1
Organism Geobacter sp. (strain M21)
Left 1236256
Right 1236447
Strand -
Nucleotide Sequence ATGTCCAGAATATGCGAGATTTGCGGTAAAGGCCCTAGCTTCGGGAATAATGTCAGCCACGCTAACAACAAAACCAGCAAAATCTGGCGCCCGAACCTGCAGAAGATCAAGGCCGTTAAAAACGGTACCGTCAGGAGCATCAAGGTCTGCACCCGCTGCATCCGCTCCGGTCACGTCACCAAGGCCCTCTAG
Sequence MSRICEICGKGPSFGNNVSHANNKTSKIWRPNLQKIKAVKNGTVRSIKVCTRCIRSGHVTKAL
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pubmed ID
Domain CDD:412338
Functional Category Ribosomal_protein
Uniprot ID C6E2G9
ORF Length (Amino Acid) 63
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Conservation Analysis
Conservation Analysis
No. of Species: 217
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1176413 1176604 - NZ_AP023213.1 Citrifermentans bremense
2 3699566 3699757 + NC_011146.1 Citrifermentans bemidjiense Bem
3 3729871 3730062 + NC_009483.1 Geobacter uraniireducens Rf4
4 2382681 2382872 - NC_011979.1 Geobacter daltonii FRC-32
5 2296892 2297083 + NZ_CP009788.1 Geobacter pickeringii
6 2595584 2595775 + NC_008609.1 Pelobacter propionicus DSM 2379
7 2631537 2631728 + NC_007517.1 Geobacter metallireducens GS-15
8 2449918 2450109 + NC_002939.5 Geobacter sulfurreducens PCA
9 1847036 1847227 - NZ_CP010802.1 Desulfuromonas soudanensis
10 1524820 1525011 - NZ_CP010311.1 Geoalkalibacter subterraneus
11 2443775 2443969 + NC_010814.1 Geobacter lovleyi SZ
12 367025 367213 - NZ_CP015519.1 Syntrophotalea acetylenivorans
13 1510522 1510713 - NC_007498.2 Syntrophotalea carbinolica DSM 2380
14 1675601 1675798 + NC_007759.1 Syntrophus aciditrophicus SB
15 2530059 2530250 + NC_015388.1 Desulfobacca acetoxidans DSM 11109
16 93627 93827 + NC_013173.1 Desulfomicrobium baculatum DSM 4028
17 1396935 1397135 - NZ_CP014230.1 Desulfomicrobium orale DSM 12838
18 67925 68119 - NZ_CP054140.1 Desulfobulbus oligotrophicus
19 590425 590613 + NC_016631.1 Granulicella mallensis MP5ACTX8
20 515443 515655 - NC_014963.1 Terriglobus saanensis SP1PR4
21 6894698 6894889 + NZ_CP015136.1 Luteitalea pratensis
22 1970757 1970948 + NC_014614.1 Acetoanaerobium sticklandii
23 721284 721496 + NC_012881.1 Maridesulfovibrio salexigens DSM 2638
24 1161627 1161818 - NZ_CP035130.1 Gudongella oleilytica
25 4011924 4012118 - NC_008554.1 Syntrophobacter fumaroxidans MPOB
26 2327689 2327883 - NZ_CP040098.1 Desulfoglaeba alkanexedens ALDC
27 539074 539265 - NC_013740.1 Acidaminococcus fermentans DSM 20731
28 1617456 1617647 - NZ_AP019004.1 Phascolarctobacterium faecium
29 2370058 2370267 - NZ_AP017378.1 Desulfovibrio ferrophilus
30 1723106 1723303 + NC_009828.1 Pseudothermotoga lettingae TMO
31 1758161 1758358 + NC_022792.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921
32 2236238 2236426 + NC_011898.1 Ruminiclostridium cellulolyticum H10
33 1509075 1509266 + NZ_LR590481.1 Hathewaya histolytica
34 127051 127239 - NZ_CP042806.1 Terriglobus albidus
35 210188 210385 + NZ_CP021255.1 Desulfobulbus oralis
36 1474432 1474641 - NZ_CP039543.1 Desulfovibrio marinus
37 457448 457639 + NC_017934.1 Mesotoga prima MesG1.Ag.4.2
38 2615176 2615379 + NC_016629.1 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay
39 2859120 2859311 + NC_021184.1 Desulfoscipio gibsoniae DSM 7213
40 4458691 4458885 + NC_018025.1 Desulfomonile tiedjei DSM 6799
41 2729767 2729955 + NZ_CP061336.1 Ruminiclostridium herbifermentans
42 1505243 1505434 - NC_006177.1 Symbiobacterium thermophilum IAM 14863
43 395950 396141 - NZ_CP061800.1 Desulfonema magnum
44 1282007 1282195 + NZ_CP020921.1 Thermodesulfobium acidiphilum
45 2762051 2762266 - NZ_LT907975.1 Pseudodesulfovibrio profundus
46 2259177 2259371 + NZ_AP017470.1 Thermotomaculum hydrothermale
47 1129980 1130171 - NC_014831.1 Thermaerobacter marianensis DSM 12885
48 1394517 1394708 + NC_014365.1 Desulfarculus baarsii DSM 2075
49 3400021 3400212 - NZ_AP021874.1 Desulfosarcina alkanivorans
50 2726838 2727026 + NZ_CP035108.1 Geovibrio thiophilus
51 1884862 1885056 + NC_006138.1 Desulfotalea psychrophila LSv54
52 1815415 1815627 - NZ_CP046400.1 Pseudodesulfovibrio cashew
53 2859890 2860084 - NC_014972.1 Desulfobulbus propionicus DSM 2032
54 1519730 1519921 - NC_011661.1 Dictyoglomus turgidum DSM 6724
55 1335333 1335524 - NC_011297.1 Dictyoglomus thermophilum H-6-12
56 1115014 1115205 - NZ_CP046996.1 Dehalobacter restrictus
57 2126273 2126464 + NZ_CP036259.1 Sporomusa termitida
58 4069275 4069466 - NZ_AP018449.1 Methylomusa anaerophila
59 3035497 3035709 + NC_014844.1 Pseudodesulfovibrio aespoeensis Aspo-2
60 1311653 1311841 + NC_007503.1 Carboxydothermus hydrogenoformans Z-2901
61 1546786 1546977 - NC_009922.1 Alkaliphilus oremlandii OhILAs
62 2588828 2589013 + NZ_CP032698.1 Streptomyces hundungensis
63 700303 700491 + NC_016630.1 Filifactor alocis ATCC 35896
64 2368595 2368786 + NC_015172.1 Syntrophobotulus glycolicus DSM 8271
65 923699 923896 - NZ_CP042909.1 Thermosulfurimonas marina
66 1140220 1140411 + NZ_CP068564.1 Keratinibaculum paraultunense
67 388766 388966 + NZ_AP014509.1 Thermotoga caldifontis AZM44c09
68 114294 114485 + NZ_CP009240.1 Megasphaera elsdenii 14-14
69 2157324 2157515 + NZ_CP009687.1 Clostridium aceticum
70 2506165 2506356 + NC_009943.1 Desulfococcus oleovorans Hxd3
71 756705 756896 - NZ_CP048877.1 Thermosulfuriphilus ammonigenes
72 1846451 1846666 + NC_016803.1 Pseudodesulfovibrio mercurii
73 1983993 1984184 + NC_013385.1 Ammonifex degensii KC4
74 5655213 5655404 + NZ_AP021876.1 Desulfosarcina ovata subsp. sediminis
75 2581635 2581829 + NC_020304.1 Desulfocapsa sulfexigens DSM 10523
76 290288 290476 + NC_014216.1 Desulfurivibrio alkaliphilus AHT 2
77 1229619 1229810 + NZ_CP018800.1 Mariprofundus ferrinatatus
78 2789232 2789423 + NC_009633.1 Alkaliphilus metalliredigens QYMF
79 323349 323540 - NZ_CP012332.1 Vulgatibacter incomptus
80 84611 84805 - NC_018645.1 Desulfobacula toluolica Tol2
81 4079088 4079276 + NZ_CP030840.1 Acidisarcina polymorpha
82 2406914 2407105 + NZ_CP020559.1 Clostridium formicaceticum
83 1149930 1150121 - NZ_CP018799.1 Mariprofundus aestuarium
84 330526 330717 + NZ_CP017269.1 Geosporobacter ferrireducens
85 3928090 3928281 - NC_020126.1 Myxococcus stipitatus DSM 14675
86 1025625 1025834 - NC_020127.1 Lawsonia intracellularis N343
87 1372361 1372549 + NC_015499.1 Thermodesulfobium narugense DSM 14796
88 242257 242454 - NZ_CP008796.1 Thermodesulfobacterium commune DSM 2178
89 1394683 1394907 - NC_012108.1 Desulfobacterium autotrophicum HRM2
90 1710385 1710576 - NZ_CP011801.1 Nitrospira moscoviensis
91 530935 531126 + NZ_CP022163.1 Melittangium boletus DSM 14713
92 6348770 6348955 - NZ_CP071139.1 Streptomyces nojiriensis
93 959077 959268 + NZ_CP029462.1 Megasphaera stantonii
94 986741 986929 - NZ_LR778174.1 Veillonella parvula
95 3602986 3603177 - NZ_CP012395.1 Clostridium autoethanogenum DSM 10061
96 1366930 1367121 - NC_014328.1 Clostridium ljungdahlii DSM 13528
97 1418352 1418543 - NC_011837.1 Clostridium kluyveri NBRC 12016
98 3038123 3038308 + NZ_CP045643.1 Streptomyces fagopyri
99 2582491 2582676 - NZ_LR134442.1 Propionibacterium australiense
100 269708 269899 + NC_017583.1 Spirochaeta thermophila DSM 6578
101 2018129 2018320 + NC_010003.1 Petrotoga mobilis SJ95
102 1552871 1553029 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
103 1170899 1171090 - NZ_CP032416.1 Clostridium fermenticellae
104 5419634 5419825 + NZ_CP012109.1 Myxococcus hansupus
105 2325919 2326110 + NZ_CP007032.1 Desulfitobacterium metallireducens DSM 15288
106 352843 353031 + NZ_LT906446.1 Megamonas hypermegale
107 1753204 1753389 - NZ_CP051486.1 Streptomyces pratensis
108 3146723 3146914 - NC_008095.1 Myxococcus xanthus DK 1622
109 4200533 4200724 + NC_015064.1 Granulicella tundricola MP5ACTX9
110 3137974 3138165 - NC_011768.1 Desulfatibacillum aliphaticivorans
111 6043867 6044052 - NZ_CP020570.1 Streptomyces violaceoruber
112 951721 951909 - NZ_CP036523.1 Peptacetobacter hiranonis
113 1032253 1032444 - NZ_LT906477.1 Clostridium cochlearium
114 4129354 4129545 - NZ_AP021875.1 Desulfosarcina widdelii
115 1187869 1188060 - NC_013216.1 Desulfofarcimen acetoxidans DSM 771
116 1642582 1642779 - NC_013223.1 Desulfohalobium retbaense DSM 5692
117 1964666 1964854 - NC_016048.1 Oscillibacter valericigenes Sjm18-20
118 575850 576047 + NZ_AP014945.1 Caldimicrobium thiodismutans
119 1163415 1163606 - NZ_CP020953.1 Clostridium drakei
120 124579 124770 - NZ_CP011803.1 Clostridium carboxidivorans P7
121 3427227 3427418 + NZ_LT828648.1 Nitrospira japonica
122 1353011 1353202 + NZ_CP061799.1 Desulfonema limicola
123 4957562 4957747 - NZ_CP023696.1 Streptomyces fradiae ATCC 10745 = DSM 40063
124 6725459 6725650 + NC_017030.1 Corallococcus coralloides DSM 2259
125 3104614 3104805 + NZ_CP009933.1 Clostridium scatologenes
126 1458019 1458210 + NZ_CP007452.1 Peptoclostridium acidaminophilum DSM 3953
127 2009884 2010084 - NZ_AP014510.1 Thermotoga profunda AZM34c06
128 786207 786398 - NZ_LT821227.1 Phoenicibacter congonensis
129 1495687 1495872 + NC_020990.1 Streptomyces albidoflavus
130 1874723 1874908 + NZ_CP031742.1 Streptomyces koyangensis
131 2441646 2441867 - NZ_CP011454.1 Gemmatimonas phototrophica
132 430164 430376 - NC_011978.1 Thermotoga neapolitana DSM 4359
133 1882902 1883093 - NC_015687.1 Clostridium acetobutylicum DSM 1731
134 518100 518291 + NZ_CP027228.1 Mogibacterium diversum
135 1829294 1829485 + NZ_CP014170.1 Clostridium tyrobutyricum
136 3290355 3290546 + NC_018017.1 Desulfitobacterium dehalogenans ATCC 51507
137 4078588 4078779 + NC_011830.1 Desulfitobacterium hafniense DCB-2
138 5917357 5917542 - NZ_CP020700.1 Streptomyces tsukubensis
139 1795254 1795445 + NZ_CP048649.1 Aminipila butyrica
140 2055762 2055953 - NC_020520.1 Ilumatobacter coccineus YM16-304
141 3146240 3146431 - NZ_CP022203.1 Corallococcus macrosporus DSM 14697
142 3301170 3301364 - NZ_CP043474.1 Mycobacterium grossiae
143 862714 862872 - NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
144 2986008 2986229 + NC_011891.1 Anaeromyxobacter dehalogenans 2CP-1
145 2578313 2578501 + NC_016627.1 Acetivibrio clariflavus DSM 19732
146 966648 966839 + NC_015577.1 Treponema azotonutricium ZAS-9
147 2928183 2928374 + NZ_CP015756.1 Clostridium estertheticum subsp. estertheticum
148 2067166 2067351 + NZ_CP023702.1 Streptomyces nitrosporeus
149 728242 728433 - NC_014758.1 Calditerrivibrio nitroreducens DSM 19672
150 617399 617605 + NZ_CP026538.1 Desulfovibrio carbinolicus
151 4515650 4515856 - NC_012796.1 Desulfovibrio magneticus RS-1
152 2307801 2308022 - NC_012489.1 Gemmatimonas aurantiaca T-27
153 960262 960453 + NC_015500.1 Treponema brennaborense DSM 12168
154 2273719 2273910 - NZ_CP059066.1 Koleobacter methoxysyntrophicus
155 3141693 3141878 - NC_014833.1 Ruminococcus albus 7 = DSM 20455
156 2234796 2234987 + NZ_CP013019.1 Clostridium pasteurianum
157 694167 694361 - NZ_AP013035.1 Thermosulfidibacter takaii ABI70S6
158 1639017 1639202 + NZ_CP065253.1 Streptomyces clavuligerus
159 2269014 2269199 + NC_010572.1 Streptomyces griseus subsp. griseus NBRC 13350
160 4771426 4771611 - NZ_CP017316.1 Streptomyces rubrolavendulae
161 2154351 2154542 - NC_015732.1 Treponema caldarium DSM 7334
162 2960011 2960202 + NZ_CP022657.1 Tumebacillus algifaecis
163 6480424 6480609 - NZ_CP027306.1 Streptomyces atratus
164 1437234 1437443 - NZ_CP014229.1 Desulfovibrio fairfieldensis
165 1143218 1143406 - NZ_CP016502.1 Acetivibrio thermocellus DSM 2360
166 6051405 6051590 - NC_021177.1 Streptomyces fulvissimus DSM 40593
167 871920 872108 - NZ_CP017237.1 Moorella thermoacetica
168 1483867 1484052 - NC_012115.1 Nautilia profundicola AmH
169 6137382 6137567 - NZ_CP020563.1 Kitasatospora albolonga
170 2162608 2162796 - NZ_CP019962.1 Eubacterium limosum
171 789975 790184 - NZ_CP045508.1 Desulfolutivibrio sulfoxidireducens
172 3919171 3919359 + NC_018515.1 Desulfosporosinus meridiei DSM 13257
173 2135153 2135344 + NC_012483.1 Acidobacterium capsulatum ATCC 51196
174 152358 152543 + NZ_CP027432.2 Caminibacter pacificus
175 1327923 1328108 - NZ_HF545616.1 Ruminococcus bicirculans
176 5986779 5986964 - NZ_CP070242.1 Streptomyces californicus
177 4826656 4826844 + NZ_CP034437.1 Paenibacillus albus
178 294236 294415 + NZ_LT635475.1 Ezakiella massiliensis
179 5855801 5855986 - NZ_CP013738.1 Streptomyces globisporus C-1027
180 5992393 5992578 - NZ_CP010407.1 Streptomyces vietnamensis
181 3628791 3629000 - NZ_CP045504.1 Desulfovibrio sulfodismutans DSM 3696
182 690718 690897 - NZ_CP034791.1 Caldicellulosiruptor changbaiensis
183 1397278 1397457 - NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903
184 468027 468203 - NZ_AP022873.1 Dissulfurispira thermophila
185 1843116 1843313 - NZ_CP018099.1 Caldithrix abyssi DSM 13497
186 4258416 4258604 + NZ_CP048209.1 Paenibacillus lycopersici
187 379359 379544 + NZ_CP040463.1 Caminibacter mediatlanticus TB-2
188 562723 562905 - NC_014720.1 Caldicellulosiruptor kronotskyensis 2002
189 1983042 1983224 + NC_014657.1 Caldicellulosiruptor owensensis OL
190 2132497 2132679 + NC_014392.1 Caldicellulosiruptor obsidiansis OB47
191 2078974 2079156 + NC_015949.1 Caldicellulosiruptor lactoaceticus 6A
192 421990 422172 - NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B
193 2327056 2327238 + NC_012034.1 Caldicellulosiruptor bescii DSM 6725
194 6455081 6455269 - NZ_CP048286.1 Paenibacillus rhizovicinus
195 615129 615311 - NC_014652.1 Caldicellulosiruptor hydrothermalis 108
196 818430 818624 - NC_018024.1 Acetomicrobium mobile DSM 13181
197 943920 944114 + NZ_CP007770.1 Campylobacter insulaenigrae NCTC 12927
198 1919375 1919560 - NC_014836.1 Desulfurispirillum indicum S5
199 960336 960530 + NZ_CP007774.1 Campylobacter volucris LMG 24379
200 983037 983231 + NC_012039.1 Campylobacter lari RM2100
201 1018906 1019100 + NZ_CP053825.1 Campylobacter armoricus
202 1074501 1074695 + NZ_CP053848.1 Campylobacter ornithocola
203 6431406 6431594 + NC_017672.3 Paenibacillus mucilaginosus K02
204 1067561 1067737 - NZ_CP006950.1 Dehalococcoides mccartyi CG4
205 1455966 1456157 + NZ_CP012547.1 Campylobacter pinnipediorum subsp. pinnipediorum
206 392132 392326 - NZ_CP020867.1 Campylobacter cuniculorum DSM 23162 = LMG 24588
207 1265235 1265426 + NZ_CP053826.1 Campylobacter curvus
208 1303716 1303907 - NZ_CP012544.1 Campylobacter showae
209 853778 853972 + NZ_CP035946.1 Campylobacter canadensis
210 731504 731695 - NZ_CP012541.1 Campylobacter concisus
211 828321 828512 + NZ_CP012543.1 Campylobacter rectus
212 291868 292077 - NZ_CP063164.1 Sulfurovum indicum
213 1677611 1677799 + NC_014926.1 Thermovibrio ammonificans HB-1
214 301482 301673 - NC_014330.1 Brachyspira pilosicoli 95/1000
215 1158443 1158634 - NZ_CP019684.1 Campylobacter sputorum bv. paraureolyticus LMG 11764
216 1031393 1031584 + NZ_CP053831.1 Campylobacter mucosalis
217 723422 723610 + NZ_CP021886.1 Helicobacter apodemus
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