* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011801.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01894.19
|
1.0
|
2
|
4528.5
|
same-strand
|
Uncharacterised protein family UPF0047
|
2
|
PF13365.8
|
1.0
|
2
|
3409.5
|
same-strand
|
Trypsin-like peptidase domain
|
3
|
PF13180.8
|
1.0
|
2
|
3409.5
|
same-strand
|
PDZ domain
|
4
|
PF00089.28
|
1.0
|
2
|
3409.5
|
same-strand
|
Trypsin
|
5
|
PF00595.26
|
1.0
|
2
|
3409.5
|
same-strand
|
PDZ domain
|
6
|
PF00004.31
|
1.0
|
2
|
1542.5
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
7
|
PF17758.3
|
1.0
|
2
|
1542.5
|
same-strand
|
Proteasomal ATPase OB N-terminal domain
|
8
|
PF16450.7
|
1.0
|
2
|
1542.5
|
same-strand
|
Proteasomal ATPase OB C-terminal domain
|
9
|
PF03136.17
|
1.0
|
2
|
837.0
|
same-strand
|
Pup-ligase protein
|
10
|
PF00227.28
|
1.0
|
2
|
490.5
|
same-strand
|
Proteasome subunit
|
11
|
PF00561.22
|
1.0
|
2
|
3497.0
|
opposite-strand
|
alpha/beta hydrolase fold
|
12
|
PF12697.9
|
1.0
|
2
|
3497.0
|
opposite-strand
|
Alpha/beta hydrolase family
|
++ More..