Result : C6DFJ7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | RNA-binding protein Hfq |
| NCBI Accession ID | CP001657.1 |
| Organism | Pectobacterium carotovorum subsp. carotovorum (strain PC1) |
| Left | 4199890 |
| Right | 4200189 |
| Strand | - |
| Nucleotide Sequence | ATGGCTAAGGGGCAATCTTTGCAAGATCCGTTCTTGAACGCTTTGCGTCGTGAACGTGTTCCGGTTTCGATTTATTTGGTGAACGGTATTAAGCTGCAAGGTCAGATCGAATCTTTCGATCAGTTCGTGATTTTGTTGAAAAACACGGTAAGTCAGATGGTTTATAAGCACGCCATCTCTACAGTTGTTCCCTCTCGTCCTGTATCTCACCATAGCAACAATCCAGGCGGCGGCAGCAATTATCACGGTAACAACACGGCGGCTTCGCAGCAGTCGCAGGAAGCTGATGACGCCGAATAA |
| Sequence | MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNPGGGSNYHGNNTAASQQSQEADDAE |
| Source of smORF | Swiss-Prot |
| Function | RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. {ECO:0000255|HAMAP-Rule:MF_00436}. |
| Pubmed ID | |
| Domain | CDD:412267 |
| Functional Category | RNA-binding |
| Uniprot ID | C6DFJ7 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 253
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 710720 | 711019 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 2 | 4120831 | 4121130 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 3 | 2250445 | 2250744 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 4 | 580740 | 581039 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 5 | 4300478 | 4300777 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 6 | 3105251 | 3105550 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 7 | 4271897 | 4272196 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 8 | 4816656 | 4816955 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 9 | 1044124 | 1044423 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 10 | 3262057 | 3262353 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 11 | 635536 | 635832 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 12 | 5031978 | 5032274 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 13 | 388442 | 388741 | + | NZ_CP065534.1 | Lonsdalea populi |
| 14 | 649059 | 649358 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 15 | 1901079 | 1901387 | + | NZ_CP065640.1 | Serratia rubidaea |
| 16 | 3948885 | 3949184 | - | NZ_LT615367.1 | Dickeya aquatica |
| 17 | 3647727 | 3648026 | - | NZ_CP015581.1 | Tatumella citrea |
| 18 | 4261218 | 4261517 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 19 | 289410 | 289715 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 20 | 4667029 | 4667337 | - | NZ_CP071320.1 | Serratia ureilytica |
| 21 | 368745 | 369053 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 22 | 501516 | 501824 | + | NZ_LT906479.1 | Serratia ficaria |
| 23 | 2066443 | 2066751 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 24 | 2597614 | 2597919 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 25 | 4016467 | 4016772 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 26 | 419263 | 419571 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 27 | 358144 | 358452 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 28 | 359307 | 359615 | + | NZ_LR134494.1 | Serratia quinivorans |
| 29 | 3344679 | 3344984 | + | NZ_CP009787.1 | Yersinia rohdei |
| 30 | 3159591 | 3159896 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 31 | 1746738 | 1747043 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 32 | 512147 | 512452 | + | NZ_CP043727.1 | Yersinia canariae |
| 33 | 4226351 | 4226656 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 34 | 448870 | 449175 | + | NZ_CP032487.1 | Yersinia hibernica |
| 35 | 2147894 | 2148199 | + | NZ_CP007230.1 | Yersinia similis |
| 36 | 2320359 | 2320670 | + | NZ_CP011254.1 | Serratia fonticola |
| 37 | 4108954 | 4109262 | + | NZ_CP067057.1 | Rahnella aceris |
| 38 | 4067431 | 4067736 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 39 | 4213703 | 4214008 | - | NZ_CP046293.1 | Yersinia intermedia |
| 40 | 3806705 | 3807013 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 41 | 540494 | 540802 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 42 | 3730302 | 3730610 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 43 | 1317262 | 1317573 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 44 | 3344968 | 3345279 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 45 | 3953569 | 3953877 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 46 | 381093 | 381401 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 47 | 235639 | 235947 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 48 | 3898647 | 3898955 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 49 | 3697297 | 3697608 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 50 | 3534367 | 3534678 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 51 | 2131316 | 2131624 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 52 | 3334910 | 3335227 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 53 | 4767266 | 4767574 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 54 | 454650 | 454958 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 55 | 5048406 | 5048714 | - | NZ_CP054254.1 | Klebsiella variicola |
| 56 | 414928 | 415236 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 57 | 536610 | 536924 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 58 | 546799 | 547110 | + | NZ_CP038853.1 | Pantoea vagans |
| 59 | 5535009 | 5535317 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 60 | 3320769 | 3321077 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 61 | 4505106 | 4505414 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 62 | 4400288 | 4400596 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 63 | 4439077 | 4439385 | + | NZ_AP014857.1 | Escherichia albertii |
| 64 | 5254140 | 5254448 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 65 | 3307510 | 3307818 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 66 | 5414240 | 5414545 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 67 | 3246622 | 3246933 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 68 | 4736511 | 4736819 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 69 | 4211903 | 4212208 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 70 | 4103284 | 4103589 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 71 | 5137929 | 5138237 | - | NZ_CP050508.1 | Raoultella terrigena |
| 72 | 3408923 | 3409234 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 73 | 1225639 | 1225944 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 74 | 3476173 | 3476472 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 75 | 4126084 | 4126395 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 76 | 3413570 | 3413878 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 77 | 3851851 | 3852159 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 78 | 3512925 | 3513236 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 79 | 4604591 | 4604899 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 80 | 3100707 | 3101018 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 81 | 426411 | 426719 | + | NZ_LR134340.1 | Escherichia marmotae |
| 82 | 5529398 | 5529706 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 83 | 1431964 | 1432263 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 84 | 3403362 | 3403670 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 85 | 2675225 | 2675530 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 86 | 4898914 | 4899219 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 87 | 181328 | 181633 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 88 | 2201208 | 2201516 | + | NZ_CP026047.1 | Raoultella planticola |
| 89 | 5116842 | 5117150 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 90 | 1069430 | 1069738 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 91 | 2961895 | 2962206 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 92 | 440600 | 440911 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 93 | 2168535 | 2168846 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 94 | 532646 | 532957 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 95 | 417030 | 417341 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 96 | 428169 | 428480 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 97 | 429854 | 430165 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 98 | 1716206 | 1716520 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 99 | 596054 | 596362 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 100 | 2383712 | 2384020 | + | NZ_CP053416.1 | Salmonella bongori |
| 101 | 4253799 | 4254098 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 102 | 510616 | 510921 | + | NZ_CP050150.1 | Hafnia alvei |
| 103 | 3612969 | 3613274 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 104 | 465755 | 466060 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 105 | 1885328 | 1885636 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 106 | 3195481 | 3195789 | + | NZ_CP033744.1 | Citrobacter freundii |
| 107 | 4824599 | 4824907 | - | NZ_CP041247.1 | Raoultella electrica |
| 108 | 4390720 | 4391028 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 109 | 4838692 | 4839000 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 110 | 3896348 | 3896659 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 111 | 4027090 | 4027398 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 112 | 3754253 | 3754564 | - | NZ_CP061511.1 | Mixta calida |
| 113 | 3976934 | 3977245 | - | NZ_CP026377.1 | Mixta gaviniae |
| 114 | 3123144 | 3123455 | - | NZ_CP028271.1 | Mixta intestinalis |
| 115 | 1553751 | 1554059 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 116 | 422546 | 422857 | + | NC_015968.1 | Enterobacter soli |
| 117 | 598703 | 599002 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 118 | 4746198 | 4746506 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 119 | 2915901 | 2916212 | - | NZ_CP038469.1 | Citrobacter tructae |
| 120 | 443460 | 443768 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 121 | 567592 | 567891 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 122 | 4083674 | 4083973 | - | NZ_CP025799.1 | Dickeya zeae |
| 123 | 400786 | 401082 | + | NZ_LR134531.1 | Pragia fontium |
| 124 | 405343 | 405645 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 125 | 3047603 | 3047905 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 126 | 558909 | 559208 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 127 | 1438155 | 1438460 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 128 | 5347098 | 5347406 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 129 | 3381839 | 3382141 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 130 | 331205 | 331507 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 131 | 3030760 | 3031062 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 132 | 4064924 | 4065226 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 133 | 3995029 | 3995328 | - | NZ_LS483422.1 | Providencia heimbachae |
| 134 | 441417 | 441707 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 135 | 3692616 | 3692906 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 136 | 1080995 | 1081288 | + | NZ_CP029736.1 | Providencia rettgeri |
| 137 | 480036 | 480326 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 138 | 1810561 | 1810851 | + | NZ_CP026364.1 | Proteus hauseri |
| 139 | 233907 | 234194 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 140 | 3457974 | 3458267 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 141 | 2359501 | 2359815 | - | NZ_CP049115.1 | Pantoea stewartii |
| 142 | 536729 | 537043 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 143 | 4030964 | 4031227 | + | NZ_CP044060.1 | Aeromonas veronii |
| 144 | 4287525 | 4287788 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 145 | 4208444 | 4208749 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 146 | 2560732 | 2561010 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 147 | 3803561 | 3803824 | - | NZ_AP022188.1 | Aeromonas media |
| 148 | 993929 | 994192 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 149 | 2581072 | 2581335 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 150 | 3712059 | 3712322 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 151 | 2611561 | 2611818 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 152 | 236026 | 236292 | + | NZ_CP022741.1 | Vibrio qinghaiensis |
| 153 | 3336571 | 3336846 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 154 | 325483 | 325746 | + | NZ_AP014635.1 | Vibrio tritonius |
| 155 | 52569 | 52838 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 156 | 77070 | 77345 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 157 | 1300348 | 1300644 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 158 | 5739956 | 5740234 | - | NZ_CP014782.1 | Shewanella psychrophila |
| 159 | 642172 | 642450 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 160 | 1480218 | 1480481 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 161 | 5072314 | 5072598 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 162 | 614406 | 614684 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 163 | 4243091 | 4243366 | - | NZ_CP046378.1 | Shewanella algae |
| 164 | 3009951 | 3010214 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 165 | 295770 | 296039 | + | NZ_CP040449.1 | Aeromonas simiae |
| 166 | 3599691 | 3599966 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 167 | 3526807 | 3527079 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 168 | 2390110 | 2390385 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 169 | 1194908 | 1195189 | + | NC_011852.1 | Glaesserella parasuis SH0165 |
| 170 | 2178890 | 2179177 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 171 | 790124 | 790402 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 172 | 1188298 | 1188561 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 173 | 3312182 | 3312442 | - | NZ_LS483470.1 | Leminorella richardii |
| 174 | 494955 | 495260 | + | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 175 | 3973800 | 3974096 | - | NZ_CP048796.1 | Providencia vermicola |
| 176 | 4323638 | 4323916 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 177 | 4431113 | 4431391 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 178 | 1012533 | 1012790 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 179 | 946340 | 946621 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 180 | 2239909 | 2240187 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 181 | 4491004 | 4491273 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 182 | 2583778 | 2584020 | - | NZ_LS483250.1 | Moritella yayanosii |
| 183 | 553509 | 553787 | + | NC_014012.1 | Shewanella violacea DSS12 |
| 184 | 4222797 | 4223066 | - | NZ_CP020472.1 | Shewanella japonica |
| 185 | 564139 | 564432 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 186 | 2222664 | 2222945 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 187 | 4012658 | 4012912 | - | NZ_CP031769.1 | Salinimonas sediminis |
| 188 | 88099 | 88377 | - | NC_004556.1 | Xylella fastidiosa Temecula1 |
| 189 | 1665151 | 1665396 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 190 | 2653944 | 2654195 | + | NZ_CP052766.1 | Alteromonas pelagimontana |
| 191 | 102141 | 102419 | - | NZ_CP053627.1 | Xylella taiwanensis |
| 192 | 1712951 | 1713226 | + | NZ_CP037883.1 | Stenotrophomonas indicatrix |
| 193 | 1650927 | 1651202 | + | NZ_LS483377.1 | Stenotrophomonas maltophilia |
| 194 | 475983 | 476237 | + | NZ_CP036536.1 | Salinimonas lutimaris |
| 195 | 4139011 | 4139259 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 196 | 1437222 | 1437479 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 197 | 575419 | 575664 | + | NZ_CP072844.1 | Psychrosphaera aestuarii |
| 198 | 2916482 | 2916760 | - | NZ_CP058243.1 | Xanthomonas campestris pv. raphani |
| 199 | 2465133 | 2465417 | - | NC_016147.2 | Pseudoxanthomonas spadix BD-a59 |
| 200 | 548466 | 548738 | + | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 201 | 2065380 | 2065658 | + | NZ_CP060731.1 | Pseudoxanthomonas mexicana |
| 202 | 1318428 | 1318703 | + | NZ_CP046570.1 | Xanthomonas albilineans |
| 203 | 481559 | 481813 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 204 | 4279424 | 4279696 | - | NZ_AP014940.1 | Lysobacter enzymogenes |
| 205 | 628501 | 628767 | - | NZ_CP038033.1 | Nitrosococcus wardiae |
| 206 | 3227758 | 3228027 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 207 | 4516279 | 4516539 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 208 | 2944027 | 2944299 | - | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 209 | 712391 | 712651 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 210 | 2534676 | 2534954 | - | NZ_LT853882.1 | Xanthomonas fragariae |
| 211 | 3842740 | 3843006 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 212 | 1211960 | 1212211 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 213 | 3090276 | 3090536 | - | NZ_CP041046.1 | Luteibacter pinisoli |
| 214 | 3406602 | 3406865 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 215 | 5519294 | 5519545 | - | NC_007645.1 | Hahella chejuensis KCTC 2396 |
| 216 | 1645551 | 1645796 | + | NZ_CP054301.1 | Marinomonas primoryensis |
| 217 | 3460892 | 3461137 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 218 | 488762 | 489025 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 219 | 285088 | 285351 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 220 | 302396 | 302659 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 221 | 2932575 | 2932826 | - | NZ_CP021435.1 | Halomonas beimenensis |
| 222 | 2983442 | 2983723 | - | NZ_CP064030.1 | Dyella caseinilytica |
| 223 | 1220658 | 1220939 | - | NZ_CP029556.1 | Lysobacter oculi |
| 224 | 3536305 | 3536586 | - | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 225 | 863937 | 864191 | + | NZ_CP013816.1 | Piscirickettsia salmonis |
| 226 | 2061283 | 2061534 | + | NZ_CP021425.1 | Oleiphilus messinensis |
| 227 | 5332281 | 5332541 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 228 | 3067245 | 3067505 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 229 | 3494888 | 3495151 | + | NZ_CP022684.1 | Ketobacter alkanivorans |
| 230 | 5452082 | 5452348 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 231 | 2825850 | 2826122 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 232 | 5601779 | 5602039 | - | NC_004578.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 233 | 5277427 | 5277687 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 234 | 2953704 | 2953961 | - | NZ_CP054840.1 | Acidovorax antarcticus |
| 235 | 582947 | 583207 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 236 | 1654238 | 1654495 | - | NZ_CP060790.1 | Acidovorax monticola |
| 237 | 5215906 | 5216166 | - | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 238 | 2526353 | 2526601 | - | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 239 | 2603019 | 2603261 | - | NZ_CP043473.1 | Chromobacterium paludis |
| 240 | 1337710 | 1337958 | - | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 241 | 1035468 | 1035710 | + | NZ_CP059563.1 | Conchiformibius steedae |
| 242 | 376412 | 376660 | - | NZ_LS483369.1 | Neisseria cinerea |
| 243 | 91787 | 92041 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 244 | 785678 | 786007 | + | NC_023029.1 | Francisella orientalis LADL--07-285A |
| 245 | 747236 | 747565 | + | NZ_CP022375.1 | Francisella opportunistica |
| 246 | 864551 | 864880 | - | NZ_CP012505.1 | Francisella persica ATCC VR-331 |
| 247 | 847010 | 847339 | + | NC_017449.1 | Francisella hispaniensis |
| 248 | 1602213 | 1602542 | - | NC_015696.1 | Francisella salina |
| 249 | 1013876 | 1014205 | - | NZ_CP043552.1 | Francisella marina |
| 250 | 817334 | 817663 | + | NZ_CP010427.1 | Allofrancisella guangzhouensis |
| 251 | 1028678 | 1029007 | - | NZ_CP038017.1 | Allofrancisella frigidaquae |
| 252 | 661865 | 662194 | + | NZ_CP038241.1 | Allofrancisella inopinata |
| 253 | 1333319 | 1333648 | - | NZ_CP022132.1 | Francisella halioticida |
| 254 | 15384 | 15641 | + | NZ_LN614827.1 | Legionella fallonii LLAP-10 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP065044.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01256.19 | 0.66 | 168 | 4869 | same-strand | Carbohydrate kinase |
| 2 | PF03853.17 | 0.65 | 165 | 4894.0 | same-strand | YjeF-related protein N-terminus |
| 3 | PF02367.19 | 0.83 | 209 | 4396.0 | same-strand | Threonylcarbamoyl adenosine biosynthesis protein TsaE |
| 4 | PF01520.20 | 0.83 | 209 | 2958.5 | same-strand | N-acetylmuramoyl-L-alanine amidase |
| 5 | PF01119.21 | 0.84 | 213 | 1045.0 | same-strand | DNA mismatch repair protein, C-terminal domain |
| 6 | PF08676.13 | 0.77 | 194 | 1046 | same-strand | MutL C terminal dimerisation domain |
| 7 | PF01715.19 | 0.95 | 241 | 102.0 | same-strand | IPP transferase |
| 8 | PF13167.8 | 0.98 | 248 | 75 | same-strand | GTP-binding GTPase N-terminal |
| 9 | PF16360.7 | 0.98 | 248 | 75 | same-strand | GTP-binding GTPase Middle Region |
| 10 | PF01926.25 | 0.98 | 249 | 75 | same-strand | 50S ribosome-binding GTPase |
| 11 | PF02421.20 | 0.87 | 219 | 76 | same-strand | Ferrous iron transport protein B |
| 12 | PF01145.27 | 0.92 | 232 | 2503 | same-strand | SPFH domain / Band 7 family |
| 13 | PF12221.10 | 0.85 | 215 | 1442.0 | same-strand | Bacterial membrane protein N terminal |
| 14 | PF00709.23 | 0.66 | 166 | 4135 | same-strand | Adenylosuccinate synthetase |
++ More..