Result : C6DEI9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0352 protein PC1_1633 |
| NCBI Accession ID | CP001657.1 |
| Organism | Pectobacterium carotovorum subsp. carotovorum (strain PC1) |
| Left | 1881570 |
| Right | 1881800 |
| Strand | - |
| Nucleotide Sequence | ATGCCACAATCATCCCGTTATAGTGACGAACACGTTGAACAACTGCTTTCTGAAATGGTCAATGTGCTGGAAAAGCACCACGCTCCGACCGATCTTGCTTTGATGGTGCTCGGTAATATGGTGACAAACCTGATTAACACCAGCATCGCGCCTGCGCAACGTCAGGTTATGGCGCGTTCTTTCGCTGAAGCCCTGCAGGCTTCTATTAAAAAAGCCGATAAAGCTCACTAA |
| Sequence | MPQSSRYSDEHVEQLLSEMVNVLEKHHAPTDLALMVLGNMVTNLINTSIAPAQRQVMARSFAEALQASIKKADKAH |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01175. Profile Description: Protein of unknown function (DUF1414). hypothetical protein; Provisional |
| Pubmed ID | |
| Domain | CDD:412779 |
| Functional Category | Others |
| Uniprot ID | C6DEI9 |
| ORF Length (Amino Acid) | 76 |
++ More..
| Conservation Analysis |
No. of Species: 182
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1999132 | 1999362 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 2 | 1934320 | 1934550 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 3 | 3530940 | 3531170 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 4 | 2889339 | 2889569 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 5 | 2994860 | 2995090 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 6 | 733991 | 734221 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 7 | 2092136 | 2092366 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 8 | 3680201 | 3680431 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 9 | 1999718 | 1999948 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 10 | 2290142 | 2290372 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 11 | 1756002 | 1756232 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 12 | 1167260 | 1167490 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 13 | 5661466 | 5661693 | + | NZ_CP011254.1 | Serratia fonticola |
| 14 | 851714 | 851941 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 15 | 3571041 | 3571268 | + | NZ_LT906479.1 | Serratia ficaria |
| 16 | 3625734 | 3625961 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 17 | 1555228 | 1555455 | - | NZ_CP071320.1 | Serratia ureilytica |
| 18 | 2828272 | 2828499 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 19 | 3521177 | 3521404 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 20 | 2885074 | 2885301 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 21 | 3613485 | 3613712 | + | NZ_LR134494.1 | Serratia quinivorans |
| 22 | 3532123 | 3532350 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 23 | 4797201 | 4797428 | + | NZ_CP065640.1 | Serratia rubidaea |
| 24 | 4164969 | 4165196 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 25 | 3003587 | 3003814 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 26 | 1655373 | 1655600 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 27 | 1168514 | 1168741 | - | NZ_CP032487.1 | Yersinia hibernica |
| 28 | 3246684 | 3246911 | - | NZ_CP007230.1 | Yersinia similis |
| 29 | 1270079 | 1270306 | + | NZ_CP009787.1 | Yersinia rohdei |
| 30 | 1686753 | 1686980 | - | NZ_CP043727.1 | Yersinia canariae |
| 31 | 932038 | 932265 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 32 | 2889627 | 2889854 | + | NZ_CP050150.1 | Hafnia alvei |
| 33 | 1150411 | 1150638 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 34 | 3441533 | 3441760 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 35 | 310160 | 310387 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 36 | 3114085 | 3114312 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 37 | 4776427 | 4776654 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 38 | 3426812 | 3427039 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 39 | 2500272 | 2500499 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 40 | 1751120 | 1751347 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 41 | 2187500 | 2187727 | + | NZ_CP065534.1 | Lonsdalea populi |
| 42 | 4523742 | 4523969 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 43 | 2329115 | 2329342 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 44 | 817275 | 817502 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 45 | 2437765 | 2437992 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 46 | 3174708 | 3174935 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 47 | 3206190 | 3206417 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 48 | 3167153 | 3167380 | + | NC_015968.1 | Enterobacter soli |
| 49 | 3313129 | 3313356 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 50 | 2457484 | 2457711 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 51 | 309917 | 310144 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 52 | 568415 | 568642 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 53 | 236313 | 236540 | - | NZ_CP067057.1 | Rahnella aceris |
| 54 | 3158075 | 3158302 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 55 | 4080283 | 4080510 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 56 | 3478923 | 3479150 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 57 | 2609811 | 2610038 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 58 | 1255361 | 1255588 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 59 | 1526927 | 1527154 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 60 | 2173374 | 2173601 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 61 | 2927073 | 2927300 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 62 | 944527 | 944754 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 63 | 245385 | 245612 | - | NZ_CP038469.1 | Citrobacter tructae |
| 64 | 4062041 | 4062268 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 65 | 1006953 | 1007180 | + | NZ_CP033744.1 | Citrobacter freundii |
| 66 | 4644366 | 4644593 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 67 | 2830817 | 2831044 | + | NZ_LR134340.1 | Escherichia marmotae |
| 68 | 2284129 | 2284356 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 69 | 2293260 | 2293487 | + | NZ_AP014857.1 | Escherichia albertii |
| 70 | 3019194 | 3019421 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 71 | 1502606 | 1502833 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 72 | 3250580 | 3250807 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 73 | 2964291 | 2964518 | + | NZ_CP046293.1 | Yersinia intermedia |
| 74 | 2124183 | 2124410 | + | NZ_CP028271.1 | Mixta intestinalis |
| 75 | 4711819 | 4712046 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 76 | 1585841 | 1586068 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 77 | 2307332 | 2307559 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 78 | 3016998 | 3017225 | + | NZ_CP026377.1 | Mixta gaviniae |
| 79 | 1989080 | 1989310 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 80 | 2049914 | 2050144 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 81 | 756958 | 757188 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 82 | 2878835 | 2879062 | + | NZ_CP061511.1 | Mixta calida |
| 83 | 1282292 | 1282519 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 84 | 1636944 | 1637171 | - | NZ_CP050508.1 | Raoultella terrigena |
| 85 | 4206370 | 4206600 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 86 | 1382278 | 1382505 | - | NZ_LR134201.1 | Cedecea lapagei |
| 87 | 2774211 | 2774438 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 88 | 2010334 | 2010564 | - | NZ_CP025799.1 | Dickeya zeae |
| 89 | 1581823 | 1582050 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 90 | 2976591 | 2976818 | - | NZ_CP019706.1 | Pantoea alhagi |
| 91 | 1566481 | 1566708 | - | NZ_CP041247.1 | Raoultella electrica |
| 92 | 2601079 | 2601306 | + | NZ_LR134531.1 | Pragia fontium |
| 93 | 3175725 | 3175952 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 94 | 2802057 | 2802287 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 95 | 1431402 | 1431629 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 96 | 3373379 | 3373606 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 97 | 111366 | 111593 | + | NZ_CP026047.1 | Raoultella planticola |
| 98 | 1965258 | 1965485 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 99 | 4703172 | 4703399 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 100 | 1338080 | 1338307 | - | NZ_LS483470.1 | Leminorella richardii |
| 101 | 1886008 | 1886235 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 102 | 850836 | 851063 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 103 | 1385318 | 1385545 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 104 | 1779534 | 1779761 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 105 | 1419329 | 1419556 | - | NZ_CP023525.1 | Cedecea neteri |
| 106 | 1376778 | 1377005 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 107 | 1788984 | 1789211 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 108 | 2848949 | 2849176 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 109 | 2842454 | 2842681 | + | NZ_CP015581.1 | Tatumella citrea |
| 110 | 2687646 | 2687873 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 111 | 1671730 | 1671957 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 112 | 2870915 | 2871142 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 113 | 3714328 | 3714555 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 114 | 2375361 | 2375588 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 115 | 1497522 | 1497749 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 116 | 3919823 | 3920050 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 117 | 1587278 | 1587505 | - | NZ_CP054254.1 | Klebsiella variicola |
| 118 | 1536838 | 1537065 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 119 | 2472195 | 2472425 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 120 | 2466558 | 2466785 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 121 | 1418848 | 1419075 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 122 | 906717 | 906944 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 123 | 2960973 | 2961200 | - | NZ_CP026364.1 | Proteus hauseri |
| 124 | 530163 | 530390 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 125 | 1251230 | 1251457 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 126 | 2898338 | 2898565 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 127 | 1055669 | 1055896 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 128 | 1414781 | 1415008 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 129 | 1319981 | 1320208 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 130 | 1828517 | 1828744 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 131 | 1579303 | 1579527 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 132 | 2994937 | 2995164 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 133 | 1331994 | 1332221 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 134 | 1283161 | 1283385 | + | NZ_CP049115.1 | Pantoea stewartii |
| 135 | 3407216 | 3407443 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 136 | 1999915 | 2000142 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 137 | 2776438 | 2776665 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 138 | 1262470 | 1262697 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 139 | 1957224 | 1957451 | - | NZ_CP048796.1 | Providencia vermicola |
| 140 | 3180204 | 3180431 | + | NZ_CP029736.1 | Providencia rettgeri |
| 141 | 2692059 | 2692286 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 142 | 1373698 | 1373925 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 143 | 1316120 | 1316347 | - | NZ_CP038853.1 | Pantoea vagans |
| 144 | 2677269 | 2677496 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 145 | 1851356 | 1851583 | - | NZ_LS483422.1 | Providencia heimbachae |
| 146 | 323130 | 323357 | + | NZ_CP053416.1 | Salmonella bongori |
| 147 | 2328660 | 2328887 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 148 | 1576344 | 1576571 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 149 | 1994476 | 1994706 | - | NZ_LT615367.1 | Dickeya aquatica |
| 150 | 1005414 | 1005644 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 151 | 348091 | 348321 | - | NZ_LS483250.1 | Moritella yayanosii |
| 152 | 1959539 | 1959757 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 153 | 897188 | 897415 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 154 | 1510341 | 1510562 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 155 | 2160834 | 2161058 | + | NZ_CP047475.1 | Vibrio astriarenae |
| 156 | 254027 | 254248 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 157 | 2327078 | 2327302 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 158 | 2359636 | 2359854 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 159 | 2057203 | 2057418 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 160 | 241551 | 241772 | + | NZ_CP018804.1 | Histophilus somni |
| 161 | 1510028 | 1510252 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 162 | 1890227 | 1890451 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 163 | 13750 | 13965 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 164 | 879060 | 879284 | - | NZ_AP019651.1 | Vibrio taketomensis |
| 165 | 959452 | 959667 | - | NZ_AP014635.1 | Vibrio tritonius |
| 166 | 1281532 | 1281756 | - | NZ_CP028926.1 | Pasteurella multocida |
| 167 | 1965927 | 1966151 | + | NZ_AP019657.1 | Vibrio ponticus |
| 168 | 2083135 | 2083359 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 169 | 2857686 | 2857913 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 170 | 1768454 | 1768672 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 171 | 3089917 | 3090135 | + | NC_016901.1 | Shewanella baltica OS678 |
| 172 | 1896852 | 1897070 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 173 | 904665 | 904892 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 174 | 1378921 | 1379139 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 175 | 1106125 | 1106349 | + | NZ_CP016180.1 | Pasteurella skyensis |
| 176 | 4837 | 5064 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 177 | 2978727 | 2978939 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 178 | 2022612 | 2022830 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 179 | 2273836 | 2274054 | - | NZ_CP014056.2 | Grimontia hollisae |
| 180 | 2765865 | 2766077 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 181 | 1664907 | 1665119 | - | NZ_CP041036.1 | Shewanella polaris |
| 182 | 1992080 | 1992292 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 183 | 1795851 | 1796078 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP065044.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF11893.10 | 1.0 | 182 | 20 | same-strand | Domain of unknown function (DUF3413) |
| 2 | PF00884.25 | 0.86 | 157 | 20.0 | same-strand | Sulfatase |
| 3 | PF04245.15 | 0.99 | 181 | 170.5 | opposite-strand | 37-kD nucleoid-associated bacterial protein |
| 4 | PF01386.21 | 0.76 | 138 | 1309 | same-strand | Ribosomal L25p family |
| 5 | PF04851.17 | 0.69 | 125 | 1745 | same-strand | Type III restriction enzyme, res subunit |
| 6 | PF00271.33 | 0.68 | 124 | 1744.0 | same-strand | Helicase conserved C-terminal domain |
| 7 | PF00270.31 | 0.69 | 125 | 1745 | same-strand | DEAD/DEAH box helicase |
++ More..