Result : C5C3G5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L32 |
| NCBI Accession ID | CP001618.1 |
| Organism | Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) |
| Left | 1850829 |
| Right | 1851029 |
| Strand | + |
| Nucleotide Sequence | GTGGCTGTTCCCAAGCGCAAGATGTCGCGCAGCAACACCCGGGCGCGCCGCTCGCAGTGGAAGGCGACTGCGGCGACGCTCACGACGTGCGAGAACTGCAAGGCTCCGCGTCAGTCGCACCAGGCGTGCCCGCAGTGCGGTCAGTACGCCGGTCGCACGTACGCCGAGGCGATCCGGACGGACGCCGTCGAGACGCGCTGA |
| Sequence | MAVPKRKMSRSNTRARRSQWKATAATLTTCENCKAPRQSHQACPQCGQYAGRTYAEAIRTDAVETR |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09115. Profile Description: Ribosomal L32p protein family. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 21304633 |
| Domain | CDD:415589 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | C5C3G5 |
| ORF Length (Amino Acid) | 66 |
++ More..
| Conservation Analysis |
No. of Species: 180
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1850829 | 1851029 | + | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 2 | 252283 | 252477 | + | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 3 | 2250311 | 2250505 | - | NC_015588.1 | Isoptericola variabilis 225 |
| 4 | 2459778 | 2459972 | - | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 5 | 3240961 | 3241155 | - | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 6 | 1306224 | 1306418 | + | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 7 | 2705706 | 2705903 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 8 | 153961 | 154155 | + | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 9 | 1801238 | 1801432 | - | NZ_LS483423.1 | Jonesia denitrificans |
| 10 | 1285529 | 1285726 | + | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 11 | 2623893 | 2624084 | - | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 12 | 1052520 | 1052714 | + | NZ_CP051884.1 | Cellulomonas taurus |
| 13 | 1012531 | 1012725 | + | NZ_CP013290.1 | Janibacter indicus |
| 14 | 2473042 | 2473236 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 15 | 2183478 | 2183672 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 16 | 1374517 | 1374711 | - | NZ_CP044548.2 | Janibacter melonis |
| 17 | 3542988 | 3543182 | + | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 18 | 2584366 | 2584560 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 19 | 2116904 | 2117098 | - | NZ_CP040887.1 | Serinicoccus chungangensis |
| 20 | 1352306 | 1352503 | + | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 21 | 1203620 | 1203814 | + | NZ_LT906453.1 | Dermatophilus congolensis |
| 22 | 310120 | 310314 | - | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 23 | 4356826 | 4357008 | + | NZ_CP016793.1 | Lentzea guizhouensis |
| 24 | 5718453 | 5718626 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 25 | 4729673 | 4729846 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 26 | 2693050 | 2693223 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 27 | 6652350 | 6652523 | + | NZ_CP022685.1 | Streptomyces formicae |
| 28 | 981405 | 981599 | - | NZ_CP018044.1 | Bifidobacterium choerinum |
| 29 | 1404373 | 1404546 | + | NZ_CP030862.1 | Streptomyces globosus |
| 30 | 3053865 | 3054038 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 31 | 8325979 | 8326161 | - | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 32 | 1875849 | 1876022 | - | NZ_CP048882.1 | Streptomyces bathyalis |
| 33 | 4984228 | 4984401 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 34 | 5657172 | 5657345 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 35 | 5685738 | 5685911 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 36 | 2414179 | 2414373 | + | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 37 | 265083 | 265277 | - | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 38 | 5380131 | 5380304 | + | NZ_CP029043.1 | Streptomyces nigra |
| 39 | 5446435 | 5446608 | + | NZ_AP023439.1 | Streptomyces tuirus |
| 40 | 2264164 | 2264337 | - | NZ_CP022310.1 | Streptomyces calvus |
| 41 | 6618535 | 6618708 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 42 | 2802528 | 2802701 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 43 | 5396817 | 5396990 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 44 | 2766944 | 2767117 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 45 | 7931256 | 7931429 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 46 | 6633891 | 6634064 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 47 | 6366690 | 6366863 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 48 | 6239348 | 6239521 | + | NZ_CP023691.1 | Streptomyces platensis |
| 49 | 4068389 | 4068571 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 50 | 6242802 | 6242975 | + | NZ_CP023407.1 | Streptomyces fungicidicus |
| 51 | 5199903 | 5200076 | + | NZ_CP015866.1 | Streptomyces parvulus |
| 52 | 5376461 | 5376634 | + | NZ_CP021080.1 | Streptomyces pluripotens |
| 53 | 1487978 | 1488151 | - | NC_020990.1 | Streptomyces albidoflavus |
| 54 | 1867010 | 1867183 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 55 | 6028677 | 6028850 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 56 | 6402623 | 6402796 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 57 | 4723498 | 4723671 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 58 | 1943776 | 1943949 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 59 | 5854056 | 5854229 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 60 | 6213207 | 6213380 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 61 | 4495378 | 4495551 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 62 | 7380065 | 7380238 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 63 | 3258473 | 3258646 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 64 | 6049168 | 6049341 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 65 | 6844460 | 6844642 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 66 | 7597465 | 7597638 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 67 | 4538435 | 4538608 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 68 | 7193383 | 7193556 | + | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 69 | 2963171 | 2963344 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 70 | 2529386 | 2529559 | - | NZ_CP026652.1 | Streptomyces dengpaensis |
| 71 | 6137141 | 6137314 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 72 | 6748114 | 6748287 | + | NZ_CP023690.1 | Streptomyces spectabilis |
| 73 | 5744941 | 5745114 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 74 | 9247505 | 9247684 | - | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 75 | 2317756 | 2317929 | - | NZ_CP023701.1 | Streptomyces subrutilus |
| 76 | 2210676 | 2210849 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 77 | 6356179 | 6356352 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 78 | 264938 | 265132 | - | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 79 | 311649 | 311843 | - | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 80 | 1760737 | 1760910 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 81 | 5690320 | 5690493 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 82 | 6059120 | 6059293 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 83 | 5863645 | 5863818 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 84 | 2261219 | 2261392 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 85 | 6853185 | 6853367 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 86 | 1819826 | 1820008 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 87 | 6880022 | 6880204 | - | NZ_CP016174.1 | Amycolatopsis orientalis |
| 88 | 5994444 | 5994617 | + | NZ_CP070242.1 | Streptomyces californicus |
| 89 | 6051532 | 6051705 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 90 | 433463 | 433657 | - | NZ_CP026999.1 | Bifidobacterium longum |
| 91 | 2059567 | 2059740 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 92 | 299455 | 299649 | - | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 93 | 403170 | 403364 | - | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 94 | 453797 | 453991 | - | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 95 | 6488326 | 6488499 | + | NZ_CP027306.1 | Streptomyces atratus |
| 96 | 5298070 | 5298243 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 97 | 2566913 | 2567110 | - | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 98 | 3057503 | 3057676 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 99 | 6145213 | 6145386 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 100 | 2724768 | 2724941 | - | NZ_CP034687.1 | Streptomyces griseoviridis |
| 101 | 2611591 | 2611785 | + | NZ_AP012331.1 | Bifidobacterium scardovii JCM 12489 = DSM 13734 |
| 102 | 3269181 | 3269354 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 103 | 2581215 | 2581388 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 104 | 5592897 | 5593070 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 105 | 2564090 | 2564263 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 106 | 2876513 | 2876686 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 107 | 3006390 | 3006563 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 108 | 7648185 | 7648358 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 109 | 7178444 | 7178617 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 110 | 3024788 | 3024961 | - | NZ_CP045643.1 | Streptomyces fagopyri |
| 111 | 2211206 | 2211379 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 112 | 2757440 | 2757613 | - | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 113 | 5663143 | 5663316 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 114 | 351940 | 352134 | - | NZ_CP006018.1 | Bifidobacterium indicum LMG 11587 = DSM 20214 |
| 115 | 365187 | 365381 | - | NZ_CP007287.1 | Bifidobacterium coryneforme |
| 116 | 2312941 | 2313123 | + | NZ_AP023396.1 | Nocardia wallacei |
| 117 | 2946811 | 2946984 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 118 | 2233413 | 2233607 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 119 | 588049 | 588243 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 120 | 5835361 | 5835534 | + | NZ_CP031194.1 | Streptomyces paludis |
| 121 | 7661405 | 7661578 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 122 | 1817758 | 1817949 | - | NZ_LT906441.1 | Cutibacterium granulosum |
| 123 | 431289 | 431483 | - | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 124 | 6700187 | 6700360 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 125 | 3745175 | 3745357 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 126 | 1460217 | 1460399 | + | NZ_CP016353.1 | Prauserella marina |
| 127 | 9549913 | 9550095 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 128 | 3444283 | 3444468 | + | NZ_CP060713.1 | Nocardioides mesophilus |
| 129 | 6866991 | 6867173 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 130 | 7010385 | 7010567 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 131 | 4964500 | 4964682 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 132 | 1858983 | 1859156 | + | NZ_CP058322.1 | Micromonospora carbonacea |
| 133 | 1795553 | 1795750 | - | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 134 | 2297876 | 2298058 | + | NZ_AP017900.1 | Nocardia seriolae |
| 135 | 5229953 | 5230126 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 136 | 1427848 | 1428045 | + | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 137 | 9086164 | 9086337 | + | NZ_AP022870.1 | Phytohabitans flavus |
| 138 | 319856 | 320053 | - | NZ_AP012333.1 | Parascardovia denticolens DSM 10105 = JCM 12538 |
| 139 | 4811308 | 4811490 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 140 | 2131949 | 2132131 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 141 | 7924476 | 7924658 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 142 | 1411746 | 1411919 | + | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 143 | 4623338 | 4623517 | - | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 144 | 1445305 | 1445478 | + | NC_009380.1 | Salinispora tropica CNB-440 |
| 145 | 3445807 | 3445986 | - | NC_009380.1 | Salinispora tropica CNB-440 |
| 146 | 1127558 | 1127731 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 147 | 1571748 | 1571927 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 148 | 192715 | 192888 | + | NZ_CP045309.1 | Micromonospora terminaliae |
| 149 | 3204605 | 3204784 | - | NZ_CP036250.1 | Egicoccus halophilus |
| 150 | 3547202 | 3547381 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 151 | 959538 | 959741 | + | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 152 | 1575457 | 1575636 | + | NZ_CP036353.1 | Gimesia maris |
| 153 | 5652736 | 5652915 | + | NZ_AP021861.1 | Lacipirellula parvula |
| 154 | 2292971 | 2293150 | - | NZ_CP043930.1 | Gimesia benthica |
| 155 | 366350 | 366553 | + | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 156 | 1511273 | 1511476 | + | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 157 | 8810057 | 8810236 | - | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 158 | 4378204 | 4378386 | - | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 159 | 1936228 | 1936410 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 160 | 975209 | 975391 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 161 | 1833835 | 1834038 | - | NZ_LR131272.1 | Arthrobacter agilis |
| 162 | 1425851 | 1426033 | + | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 163 | 2762670 | 2762873 | - | NZ_CP013254.1 | Kocuria flava |
| 164 | 6051119 | 6051301 | - | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 165 | 5544773 | 5544955 | - | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 166 | 2510308 | 2510490 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 167 | 164290 | 164493 | + | NZ_CP035810.1 | Brevibacterium luteolum |
| 168 | 965877 | 966089 | + | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 169 | 2355174 | 2355377 | + | NZ_CP035491.1 | Agromyces protaetiae |
| 170 | 2577360 | 2577572 | - | NZ_LR134442.1 | Propionibacterium australiense |
| 171 | 508178 | 508390 | - | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 172 | 8860251 | 8860433 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 173 | 2519797 | 2519979 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 174 | 3509977 | 3510159 | - | NZ_CP027793.1 | Rhodococcus hoagii |
| 175 | 4854969 | 4855151 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 176 | 5735468 | 5735650 | - | NZ_LR134352.1 | Nocardia asteroides |
| 177 | 2082810 | 2082992 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 178 | 4333614 | 4333796 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 179 | 3228071 | 3228256 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 180 | 2504908 | 2505081 | + | NZ_AP023355.1 | Actinocatenispora thailandica |
| 181 | 3645077 | 3645259 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 182 | 9310238 | 9310411 | - | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 183 | 1329765 | 1329935 | + | NC_014666.1 | Frankia inefficax |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_012669.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03602.17 | 0.76 | 137 | 2478 | same-strand | Conserved hypothetical protein 95 |
| 2 | PF01467.28 | 0.94 | 170 | 1931.5 | same-strand | Cytidylyltransferase-like |
| 3 | PF02620.19 | 0.98 | 176 | 3.0 | same-strand | Large ribosomal RNA subunit accumulation protein YceD |
| 4 | PF14622.8 | 0.97 | 174 | 20.0 | same-strand | Ribonuclease-III-like |
| 5 | PF00636.28 | 0.97 | 175 | 20 | same-strand | Ribonuclease III domain |
| 6 | PF00035.28 | 0.96 | 172 | 20.0 | same-strand | Double-stranded RNA binding motif |
| 7 | PF01149.26 | 0.88 | 158 | 928.5 | same-strand | Formamidopyrimidine-DNA glycosylase N-terminal domain |
| 8 | PF06831.16 | 0.88 | 158 | 928.5 | same-strand | Formamidopyrimidine-DNA glycosylase H2TH domain |
| 9 | PF06827.16 | 0.78 | 140 | 927.0 | same-strand | Zinc finger found in FPG and IleRS |
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