Result : C4LAC2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CP001616.1 |
| Organism | Tolumonas auensis (strain DSM 9187 / TA4) |
| Left | 2733411 |
| Right | 2733677 |
| Strand | + |
| Nucleotide Sequence | ATGGCCGCCAAAAAGACCGAATCATTAAGTTTTGATGCTGCTCTCGGAGAGCTGGAGCAAATTGTGCAACAGCTGGAACAGGGTGATTTACCGCTGGAAACAGCACTGAAACAATTTGAACGAGGCATTCAGCTGGCGCGGGTGAGCAAACAAAAATTAGAACAAGCGGAACAGCAGGTGCAGATACTGTTACAACAGGGTGAGCAGGAAAAACTGACGCCATTTACTGTTGAACAGACATCCGGCCAGAACGCAGAGGAAGAATAA |
| Sequence | MAAKKTESLSFDAALGELEQIVQQLEQGDLPLETALKQFERGIQLARVSKQKLEQAEQQVQILLQQGEQEKLTPFTVEQTSGQNAEEE |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | C4LAC2 |
| ORF Length (Amino Acid) | 88 |
++ More..
| Conservation Analysis |
No. of Species: 247
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2733411 | 2733677 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 2 | 1053822 | 1054073 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 3 | 3819874 | 3820119 | - | NZ_LS483250.1 | Moritella yayanosii |
| 4 | 1033168 | 1033410 | - | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 5 | 11428 | 11673 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 6 | 2661878 | 2662120 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 7 | 1450466 | 1450705 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 8 | 3774268 | 3774519 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 9 | 2210946 | 2211179 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 10 | 761315 | 761557 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 11 | 2364489 | 2364731 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 12 | 1658518 | 1658757 | - | NC_016901.1 | Shewanella baltica OS678 |
| 13 | 2497258 | 2497521 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 14 | 3397990 | 3398232 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 15 | 4607957 | 4608208 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 16 | 3749484 | 3749717 | + | NZ_CP028897.1 | Dongshaea marina |
| 17 | 3074314 | 3074550 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 18 | 2933943 | 2934176 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 19 | 1061224 | 1061466 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 20 | 4152839 | 4153090 | - | NZ_CP044060.1 | Aeromonas veronii |
| 21 | 2619450 | 2619701 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 22 | 2989842 | 2990084 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 23 | 1098844 | 1099086 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 24 | 1113627 | 1113878 | - | NZ_AP022188.1 | Aeromonas media |
| 25 | 1090381 | 1090623 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 26 | 1503665 | 1503907 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 27 | 606050 | 606301 | - | NZ_CP040449.1 | Aeromonas simiae |
| 28 | 2346688 | 2346930 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 29 | 3053924 | 3054166 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 30 | 2197414 | 2197656 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 31 | 3559782 | 3560024 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 32 | 2692871 | 2693116 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 33 | 1054653 | 1054895 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 34 | 4029767 | 4030009 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 35 | 1315266 | 1315505 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 36 | 3555381 | 3555623 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 37 | 2644239 | 2644481 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 38 | 4469052 | 4469294 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 39 | 1046109 | 1046351 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 40 | 1004693 | 1004935 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 41 | 162961 | 163203 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 42 | 1245593 | 1245835 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 43 | 191869 | 192105 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 44 | 1115117 | 1115359 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 45 | 2945453 | 2945695 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 46 | 4728470 | 4728712 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 47 | 3313772 | 3314014 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 48 | 1656049 | 1656291 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 49 | 370473 | 370715 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 50 | 441101 | 441343 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 51 | 507155 | 507397 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 52 | 4648426 | 4648668 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 53 | 4674244 | 4674486 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 54 | 2682299 | 2682541 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 55 | 4040041 | 4040283 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 56 | 3433212 | 3433454 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 57 | 2549030 | 2549269 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 58 | 1089245 | 1089487 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 59 | 3427070 | 3427312 | + | NZ_CP050150.1 | Hafnia alvei |
| 60 | 1978502 | 1978747 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 61 | 3425117 | 3425353 | + | NZ_CP020472.1 | Shewanella japonica |
| 62 | 4416370 | 4416612 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 63 | 2211056 | 2211298 | + | NZ_CP038469.1 | Citrobacter tructae |
| 64 | 4087187 | 4087429 | + | NZ_CP041247.1 | Raoultella electrica |
| 65 | 4324236 | 4324478 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 66 | 1432880 | 1433125 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 67 | 1001159 | 1001401 | - | NC_015968.1 | Enterobacter soli |
| 68 | 1170720 | 1170962 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 69 | 4307876 | 4308118 | + | NZ_CP054254.1 | Klebsiella variicola |
| 70 | 3738972 | 3739214 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 71 | 4251501 | 4251740 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 72 | 3524229 | 3524471 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 73 | 1175113 | 1175355 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 74 | 3940529 | 3940771 | - | NZ_CP033744.1 | Citrobacter freundii |
| 75 | 1340996 | 1341232 | - | NZ_CP041036.1 | Shewanella polaris |
| 76 | 731355 | 731600 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 77 | 1083047 | 1083289 | - | NZ_LR134340.1 | Escherichia marmotae |
| 78 | 454919 | 455161 | - | NZ_AP014857.1 | Escherichia albertii |
| 79 | 708794 | 709036 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 80 | 1195375 | 1195617 | - | NZ_CP061511.1 | Mixta calida |
| 81 | 3078341 | 3078583 | + | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 82 | 1599116 | 1599355 | - | NZ_CP046378.1 | Shewanella algae |
| 83 | 2829897 | 2830139 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 84 | 866292 | 866534 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 85 | 2536297 | 2536539 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 86 | 3471493 | 3471735 | + | NZ_LR134201.1 | Cedecea lapagei |
| 87 | 2414330 | 2414572 | + | NZ_CP067057.1 | Rahnella aceris |
| 88 | 2574259 | 2574501 | + | NC_011753.2 | Vibrio atlanticus |
| 89 | 1118998 | 1119240 | + | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 90 | 1961383 | 1961625 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 91 | 1100662 | 1100904 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 92 | 985946 | 986200 | - | NZ_CP046268.1 | Vibrio spartinae |
| 93 | 376221 | 376469 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 94 | 3660163 | 3660399 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 95 | 643442 | 643684 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 96 | 4430424 | 4430666 | + | NZ_CP050508.1 | Raoultella terrigena |
| 97 | 1352264 | 1352512 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 98 | 99782 | 100030 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 99 | 1267632 | 1267874 | - | NZ_CP026377.1 | Mixta gaviniae |
| 100 | 771114 | 771356 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 101 | 3577798 | 3578046 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 102 | 534475 | 534723 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 103 | 3170339 | 3170587 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 104 | 1986898 | 1987140 | + | NZ_CP033078.1 | Vibrio zhugei |
| 105 | 2920491 | 2920733 | - | NZ_CP026047.1 | Raoultella planticola |
| 106 | 738213 | 738455 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 107 | 2842519 | 2842758 | - | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 108 | 402515 | 402757 | + | NZ_CP019706.1 | Pantoea alhagi |
| 109 | 2721589 | 2721825 | + | NC_008709.1 | Psychromonas ingrahamii 37 |
| 110 | 2209906 | 2210148 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 111 | 853132 | 853374 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 112 | 1939360 | 1939602 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 113 | 4124153 | 4124395 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 114 | 2058884 | 2059129 | - | NZ_CP014056.2 | Grimontia hollisae |
| 115 | 977212 | 977454 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 116 | 1316575 | 1316817 | - | NZ_CP040990.1 | Vibrio furnissii |
| 117 | 517516 | 517758 | - | NZ_AP019657.1 | Vibrio ponticus |
| 118 | 1917941 | 1918183 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 119 | 3064581 | 3064823 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 120 | 3211899 | 3212162 | - | NZ_CP011254.1 | Serratia fonticola |
| 121 | 2541387 | 2541629 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 122 | 3754991 | 3755230 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 123 | 2887322 | 2887540 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 124 | 4043925 | 4044164 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 125 | 2324886 | 2325131 | + | NZ_CP045350.1 | Vibrio aquimaris |
| 126 | 3821907 | 3822149 | + | NZ_CP023525.1 | Cedecea neteri |
| 127 | 1079968 | 1080210 | - | NZ_CP037951.1 | Parashewanella tropica |
| 128 | 1293856 | 1294104 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 129 | 1050494 | 1050736 | - | NZ_CP065534.1 | Lonsdalea populi |
| 130 | 888774 | 889019 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 131 | 3373827 | 3374075 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 132 | 2889428 | 2889670 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 133 | 800009 | 800251 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 134 | 3016994 | 3017236 | - | NZ_CP053416.1 | Salmonella bongori |
| 135 | 1266858 | 1267106 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 136 | 2817656 | 2817898 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 137 | 1243695 | 1243934 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 138 | 3514834 | 3515082 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 139 | 3984041 | 3984304 | + | NZ_CP071320.1 | Serratia ureilytica |
| 140 | 386230 | 386493 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 141 | 1071767 | 1072030 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 142 | 3753015 | 3753263 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 143 | 1222236 | 1222484 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 144 | 434615 | 434857 | - | NZ_CP028271.1 | Mixta intestinalis |
| 145 | 4012269 | 4012523 | - | NZ_CP009787.1 | Yersinia rohdei |
| 146 | 1238305 | 1238553 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 147 | 1164847 | 1165089 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 148 | 477417 | 477659 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 149 | 243490 | 243732 | - | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 150 | 497725 | 497967 | - | NZ_CP035688.1 | Vibrio metoecus |
| 151 | 3538619 | 3538861 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 152 | 1064732 | 1064974 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 153 | 817048 | 817290 | - | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 154 | 2846508 | 2846750 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 155 | 1183815 | 1184063 | - | NZ_CP025799.1 | Dickeya zeae |
| 156 | 2412680 | 2412922 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 157 | 992829 | 993071 | + | NZ_CP046793.1 | Vibrio metschnikovii |
| 158 | 3344377 | 3344625 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 159 | 1560431 | 1560679 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 160 | 3353722 | 3353958 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 161 | 3274622 | 3274861 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 162 | 2161983 | 2162225 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 163 | 2924326 | 2924580 | + | NZ_CP032487.1 | Yersinia hibernica |
| 164 | 2107652 | 2107894 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 165 | 3661557 | 3661796 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 166 | 3491235 | 3491489 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 167 | 2509856 | 2510098 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 168 | 2782736 | 2782978 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 169 | 2928446 | 2928664 | + | NC_008700.1 | Shewanella amazonensis SB2B |
| 170 | 3472866 | 3473120 | + | NZ_CP043727.1 | Yersinia canariae |
| 171 | 3491765 | 3492007 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 172 | 3828700 | 3828939 | + | NC_011566.1 | Shewanella piezotolerans WP3 |
| 173 | 524314 | 524556 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 174 | 1044774 | 1045016 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 175 | 742501 | 742743 | - | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 176 | 803902 | 804144 | - | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 177 | 679312 | 679554 | - | NZ_CP030788.1 | Vibrio campbellii |
| 178 | 1080206 | 1080460 | - | NZ_CP046293.1 | Yersinia intermedia |
| 179 | 1120700 | 1120942 | + | NZ_CP019959.1 | Vibrio owensii |
| 180 | 920628 | 920870 | - | NZ_CP009467.1 | Vibrio harveyi |
| 181 | 3609800 | 3610018 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 182 | 2763578 | 2763820 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 183 | 2555060 | 2555302 | + | NZ_AP014635.1 | Vibrio tritonius |
| 184 | 2388365 | 2388619 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 185 | 987800 | 988042 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 186 | 3041520 | 3041768 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 187 | 2189190 | 2189432 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 188 | 3555596 | 3555841 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 189 | 1554943 | 1555197 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 190 | 2935939 | 2936181 | + | NC_013456.1 | Vibrio antiquarius |
| 191 | 2416357 | 2416599 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 192 | 2541496 | 2541738 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 193 | 238338 | 238592 | - | NZ_CP020465.1 | Cognaticolwellia beringensis |
| 194 | 966005 | 966247 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 195 | 3449800 | 3450048 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 196 | 4902655 | 4902918 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 197 | 411229 | 411477 | - | NC_002971.4 | Coxiella burnetii RSA 493 |
| 198 | 3223293 | 3223535 | + | NZ_LT615367.1 | Dickeya aquatica |
| 199 | 3592854 | 3593096 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 200 | 3417301 | 3417555 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 201 | 2010158 | 2010406 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 202 | 2534748 | 2534987 | + | NZ_CP020373.1 | Shewanella khirikhana |
| 203 | 1066778 | 1066996 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 204 | 3152353 | 3152595 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 205 | 1452695 | 1452949 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 206 | 1375389 | 1375628 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 207 | 1539700 | 1539939 | + | NZ_LS483429.1 | Haemophilus aegyptius |
| 208 | 3087451 | 3087693 | + | NZ_CP038853.1 | Pantoea vagans |
| 209 | 3903172 | 3903414 | - | NZ_CP049115.1 | Pantoea stewartii |
| 210 | 2778067 | 2778321 | - | NZ_CP007230.1 | Yersinia similis |
| 211 | 1110413 | 1110661 | - | NC_003910.7 | Colwellia psychrerythraea 34H |
| 212 | 2190806 | 2191051 | + | NZ_CP028926.1 | Pasteurella multocida |
| 213 | 1748560 | 1748790 | + | NZ_AP017928.1 | Methylocaldum marinum |
| 214 | 667150 | 667389 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 215 | 3483832 | 3484074 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 216 | 1044345 | 1044593 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 217 | 1113491 | 1113733 | - | NZ_CP015581.1 | Tatumella citrea |
| 218 | 3351201 | 3351434 | - | NZ_CP014476.1 | Methylomonas denitrificans |
| 219 | 3588824 | 3589057 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 220 | 729207 | 729452 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 221 | 3424196 | 3424429 | + | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 222 | 684489 | 684737 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 223 | 854732 | 854983 | - | NZ_LS483422.1 | Providencia heimbachae |
| 224 | 3829005 | 3829238 | + | NC_015572.1 | Methylomonas methanica MC09 |
| 225 | 962216 | 962431 | - | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 226 | 30004 | 30255 | + | NZ_CP029736.1 | Providencia rettgeri |
| 227 | 173511 | 173762 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 228 | 339837 | 340115 | + | NZ_CP014143.1 | Microbulbifer aggregans |
| 229 | 4250334 | 4250567 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 230 | 670063 | 670281 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 231 | 123435 | 123698 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 232 | 390925 | 391164 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 233 | 263931 | 264182 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 234 | 1137780 | 1138013 | + | NZ_CP037953.1 | Permianibacter aggregans |
| 235 | 1020738 | 1020980 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 236 | 1473353 | 1473595 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 237 | 837766 | 837987 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 238 | 813392 | 813643 | - | NZ_CP048796.1 | Providencia vermicola |
| 239 | 2971881 | 2972129 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 240 | 1086621 | 1086863 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 241 | 2489935 | 2490177 | + | NZ_LS483470.1 | Leminorella richardii |
| 242 | 1631633 | 1631869 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 243 | 2104130 | 2104363 | + | NZ_CP012418.1 | Kangiella sediminilitoris |
| 244 | 2121971 | 2122213 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 245 | 2093261 | 2093509 | + | NZ_CP010975.1 | Kangiella geojedonensis |
| 246 | 2708656 | 2708898 | + | NZ_LR134531.1 | Pragia fontium |
| 247 | 2269088 | 2269345 | - | NZ_CP036259.1 | Sporomusa termitida |
| 248 | 2280 | 2504 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP040428.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02568.16 | 0.82 | 202 | 255 | opposite-strand | Thiamine biosynthesis protein (ThiI) |
| 2 | PF02926.19 | 0.7 | 173 | 246.0 | opposite-strand | THUMP domain |
| 3 | PF00348.19 | 0.99 | 245 | 1.0 | same-strand | Polyprenyl synthetase |
| 4 | PF13292.8 | 0.99 | 245 | 927.0 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 5 | PF02779.26 | 0.99 | 245 | 927.0 | same-strand | Transketolase, pyrimidine binding domain |
| 6 | PF02780.22 | 0.99 | 245 | 927.0 | same-strand | Transketolase, C-terminal domain |
| 7 | PF00586.26 | 0.62 | 152 | 3979.0 | opposite-strand | AIR synthase related protein, N-terminal domain |
++ More..