Result : C4K6M5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CP001277.1 |
| Organism | Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) |
| Left | 1452915 |
| Right | 1453205 |
| Strand | + |
| Nucleotide Sequence | ATGCCAAAATTAACCTCTGCAAGCTCAGACTTTTCTGAGAAAAAAAAATCCAAAATAAAAAAAAATGCCTCGATCAGTTTTGAAACCGCCTTAAATGATTTGGAGCAGGTTGTTACTCGCCTGGAGTCGGGCAATCTTTCATTAGAAGAAGCCCTCAATGAATTCGAACGAGGCATCAAATTAACAAAACAAACGCAAAAAACGTTGTTAGAGGCAGAACAACATGTAAAAATTTTACTCAGCGATACCCCTGATGCGAAATTAAATCCGTTCACCCTTGATTCTGAGTAA |
| Sequence | MPKLTSASSDFSEKKKSKIKKNASISFETALNDLEQVVTRLESGNLSLEEALNEFERGIKLTKQTQKTLLEAEQHVKILLSDTPDAKLNPFTLDSE |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 19451630 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | C4K6M5 |
| ORF Length (Amino Acid) | 96 |
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| Conservation Analysis |
No. of Species: 115
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1080206 | 1080460 | - | NZ_CP046293.1 | Yersinia intermedia |
| 2 | 3555381 | 3555623 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 3 | 2778067 | 2778321 | - | NZ_CP007230.1 | Yersinia similis |
| 4 | 2952690 | 2952938 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 5 | 1046109 | 1046351 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 6 | 1004693 | 1004935 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 7 | 162961 | 163203 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 8 | 1245593 | 1245835 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 9 | 3417301 | 3417555 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 10 | 2211056 | 2211298 | + | NZ_CP038469.1 | Citrobacter tructae |
| 11 | 1503665 | 1503907 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 12 | 2388365 | 2388619 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 13 | 2536297 | 2536539 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 14 | 1175113 | 1175355 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 15 | 3940529 | 3940771 | - | NZ_CP033744.1 | Citrobacter freundii |
| 16 | 1054653 | 1054895 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 17 | 2644239 | 2644481 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 18 | 4469052 | 4469294 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 19 | 1267632 | 1267874 | - | NZ_CP026377.1 | Mixta gaviniae |
| 20 | 4124153 | 4124395 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 21 | 3433212 | 3433454 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 22 | 2924326 | 2924580 | + | NZ_CP032487.1 | Yersinia hibernica |
| 23 | 434615 | 434857 | - | NZ_CP028271.1 | Mixta intestinalis |
| 24 | 3738972 | 3739214 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 25 | 402515 | 402757 | + | NZ_CP019706.1 | Pantoea alhagi |
| 26 | 1961383 | 1961625 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 27 | 1100662 | 1100904 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 28 | 3472866 | 3473120 | + | NZ_CP043727.1 | Yersinia canariae |
| 29 | 4416370 | 4416612 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 30 | 4648426 | 4648668 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 31 | 3609776 | 3610018 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 32 | 3491235 | 3491489 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 33 | 1195375 | 1195617 | - | NZ_CP061511.1 | Mixta calida |
| 34 | 3524229 | 3524471 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 35 | 3313772 | 3314014 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 36 | 1656049 | 1656291 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 37 | 370473 | 370715 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 38 | 441101 | 441343 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 39 | 2541387 | 2541629 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 40 | 507155 | 507397 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 41 | 3821907 | 3822149 | + | NZ_CP023525.1 | Cedecea neteri |
| 42 | 1917941 | 1918183 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 43 | 977212 | 977454 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 44 | 3491765 | 3492007 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 45 | 4728470 | 4728712 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 46 | 4674244 | 4674486 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 47 | 1115117 | 1115359 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 48 | 4012269 | 4012523 | - | NZ_CP009787.1 | Yersinia rohdei |
| 49 | 3373827 | 3374075 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 50 | 987800 | 988042 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 51 | 1083047 | 1083289 | - | NZ_LR134340.1 | Escherichia marmotae |
| 52 | 454919 | 455161 | - | NZ_AP014857.1 | Escherichia albertii |
| 53 | 1554943 | 1555197 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 54 | 1001159 | 1001401 | - | NC_015968.1 | Enterobacter soli |
| 55 | 3577798 | 3578046 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 56 | 1266858 | 1267106 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 57 | 3753015 | 3753263 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 58 | 534475 | 534723 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 59 | 3170339 | 3170587 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 60 | 3471493 | 3471735 | + | NZ_LR134201.1 | Cedecea lapagei |
| 61 | 4029767 | 4030009 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 62 | 2346688 | 2346930 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 63 | 3053924 | 3054166 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 64 | 4087187 | 4087429 | + | NZ_CP041247.1 | Raoultella electrica |
| 65 | 4324236 | 4324478 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 66 | 1293856 | 1294104 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 67 | 3538619 | 3538861 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 68 | 1098844 | 1099086 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 69 | 4040041 | 4040283 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 70 | 2763578 | 2763820 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 71 | 376221 | 376469 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 72 | 1352264 | 1352512 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 73 | 99782 | 100030 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 74 | 1090381 | 1090623 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 75 | 1064732 | 1064974 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 76 | 1170720 | 1170962 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 77 | 4307876 | 4308118 | + | NZ_CP054254.1 | Klebsiella variicola |
| 78 | 2829897 | 2830139 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 79 | 2920491 | 2920733 | - | NZ_CP026047.1 | Raoultella planticola |
| 80 | 4430424 | 4430666 | + | NZ_CP050508.1 | Raoultella terrigena |
| 81 | 1089245 | 1089487 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 82 | 2989842 | 2990084 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 83 | 3344377 | 3344625 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 84 | 1560431 | 1560679 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 85 | 1114552 | 1114815 | - | NZ_LR134494.1 | Serratia quinivorans |
| 86 | 3427070 | 3427312 | + | NZ_CP050150.1 | Hafnia alvei |
| 87 | 1238305 | 1238553 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 88 | 3211899 | 3212162 | - | NZ_CP011254.1 | Serratia fonticola |
| 89 | 477417 | 477659 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 90 | 1098056 | 1098319 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 91 | 3016994 | 3017236 | - | NZ_CP053416.1 | Salmonella bongori |
| 92 | 1183815 | 1184063 | - | NZ_CP025799.1 | Dickeya zeae |
| 93 | 2107652 | 2107894 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 94 | 1164847 | 1165089 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 95 | 2945453 | 2945695 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 96 | 1040920 | 1041183 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 97 | 1050494 | 1050736 | - | NZ_CP065534.1 | Lonsdalea populi |
| 98 | 1176954 | 1177217 | - | NZ_LT906479.1 | Serratia ficaria |
| 99 | 1061224 | 1061466 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 100 | 670063 | 670341 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 101 | 1433559 | 1433822 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 102 | 854732 | 854983 | - | NZ_LS483422.1 | Providencia heimbachae |
| 103 | 30004 | 30255 | + | NZ_CP029736.1 | Providencia rettgeri |
| 104 | 173511 | 173762 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 105 | 2197414 | 2197656 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 106 | 3559782 | 3560024 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 107 | 813392 | 813643 | - | NZ_CP048796.1 | Providencia vermicola |
| 108 | 1044774 | 1045016 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 109 | 263931 | 264182 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 110 | 2414330 | 2414572 | + | NZ_CP067057.1 | Rahnella aceris |
| 111 | 2589027 | 2589293 | - | NZ_CP065640.1 | Serratia rubidaea |
| 112 | 1340996 | 1341232 | - | NZ_CP041036.1 | Shewanella polaris |
| 113 | 750086 | 750319 | + | NZ_CP036200.1 | Shewanella maritima |
| 114 | 2489935 | 2490177 | + | NZ_LS483470.1 | Leminorella richardii |
| 115 | 3660163 | 3660399 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 116 | 3353722 | 3353958 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP054043.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00586.26 | 0.87 | 100 | 4064.5 | opposite-strand | AIR synthase related protein, N-terminal domain |
| 2 | PF02769.24 | 0.69 | 79 | 4347 | opposite-strand | AIR synthase related protein, C-terminal domain |
| 3 | PF04608.15 | 0.71 | 82 | 3871 | opposite-strand | Phosphatidylglycerophosphatase A |
| 4 | PF13292.8 | 1.0 | 115 | 927.0 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 5 | PF02779.26 | 1.0 | 115 | 927.0 | same-strand | Transketolase, pyrimidine binding domain |
| 6 | PF02780.22 | 1.0 | 115 | 927.0 | same-strand | Transketolase, C-terminal domain |
| 7 | PF00348.19 | 0.99 | 114 | 1 | same-strand | Polyprenyl synthetase |
| 8 | PF02568.16 | 1.0 | 115 | 221.0 | opposite-strand | Thiamine biosynthesis protein (ThiI) |
| 9 | PF01965.26 | 0.89 | 102 | 1765.0 | same-strand | DJ-1/PfpI family |
| 10 | PF08546.13 | 0.89 | 102 | 2313 | same-strand | Ketopantoate reductase PanE/ApbA C terminal |
| 11 | PF02558.18 | 0.89 | 102 | 2313 | same-strand | Ketopantoate reductase PanE/ApbA |
| 12 | PF04461.15 | 0.87 | 100 | 3396 | opposite-strand | Protein of unknown function (DUF520) |
| 13 | PF02926.19 | 0.99 | 114 | 221 | opposite-strand | THUMP domain |
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