ProsmORF-pred
Result : C4K3J7
Protein Information
Information Type Description
Protein name 50S ribosomal protein L31
NCBI Accession ID CP001277.1
Organism Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
Left 388746
Right 388967
Strand -
Nucleotide Sequence ATGAAAAAAAATATCCATCCAGACTATAAGTTAGTAATAGCATCCTGTTCTTGTGGAAACGTGATTGAAGTGAATTCAACCTTGGGTTGTAATATAAATCTTGATGTTTGTTCTAACTGTCACCCTGCCTATACAAACAAAAAGCGTGAAGCGGCAACAGGTGGGCGTGTTGATCGATTCAAAAAACGTTTTTCTTTCCTGGAATCGTCAAAGGCAGAGTGA
Sequence MKKNIHPDYKLVIASCSCGNVIEVNSTLGCNINLDVCSNCHPAYTNKKREAATGGRVDRFKKRFSFLESSKAE
Source of smORF Swiss-Prot
Function Binds the 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_00501}.
Pubmed ID 19451630
Domain CDD:412343
Functional Category Metal-binding_and_Ribosomal_protein
Uniprot ID C4K3J7
ORF Length (Amino Acid) 73
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 534
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2139568 2139783 - NZ_CP011078.1 Yersinia ruckeri
2 118134 118349 + NZ_CP032487.1 Yersinia hibernica
3 1098557 1098775 + NZ_CP054043.1 Yersinia mollaretii ATCC 43969
4 3005593 3005808 + NZ_CP009787.1 Yersinia rohdei
5 4578487 4578702 - NZ_CP011118.1 Yersinia enterocolitica
6 115740 115955 + NZ_CP043727.1 Yersinia canariae
7 4568043 4568258 - NZ_CP046293.1 Yersinia intermedia
8 2746538 2746750 - NZ_CP052766.1 Alteromonas pelagimontana
9 3713427 3713642 - NZ_LR134531.1 Pragia fontium
10 774826 775041 - NZ_CP020388.1 Pluralibacter gergoviae
11 4103966 4104181 - NC_013892.1 Xenorhabdus bovienii SS-2004
12 1146946 1147161 + NZ_CP023536.1 Providencia alcalifaciens
13 926989 927204 + NZ_CP029736.1 Providencia rettgeri
14 3611188 3611403 - NZ_CP031123.2 Providencia huaxiensis
15 229115 229330 + NZ_CP034752.1 Jinshanibacter zhutongyuii
16 6036765 6036980 - NZ_CP060111.1 Klebsiella michiganensis
17 206311 206526 + NZ_FO704550.1 Xenorhabdus doucetiae
18 263337 263552 + NZ_CP029185.2 Limnobaculum parvum
19 203699 203914 - NZ_CP009056.1 Frischella perrara
20 5151962 5152177 - NZ_CP041247.1 Raoultella electrica
21 1859641 1859856 + NZ_CP026047.1 Raoultella planticola
22 5450138 5450353 - NZ_CP046672.1 Raoultella ornithinolytica
23 116888 117100 + NZ_LS483470.1 Leminorella richardii
24 4459951 4460166 - NZ_LR134373.1 Yersinia pseudotuberculosis
25 1742319 1742534 + NZ_CP007230.1 Yersinia similis
26 5471228 5471443 - NZ_CP050508.1 Raoultella terrigena
27 3218244 3218459 - NZ_CP060401.1 Xenorhabdus nematophila
28 4144704 4144919 - NZ_CP048796.1 Providencia vermicola
29 2567793 2568008 - NZ_CP009781.1 Yersinia aldovae 670-83
30 4551088 4551303 - NZ_CP034036.1 Brenneria nigrifluens DSM 30175 = ATCC 13028
31 6030750 6030965 - NZ_CP036175.1 Klebsiella huaxiensis
32 570252 570464 - NZ_CP036536.1 Salinimonas lutimaris
33 2896509 2896721 + NZ_CP033744.1 Citrobacter freundii
34 4560482 4560694 - NZ_CP035129.1 Kosakonia cowanii
35 4916556 4916771 - NC_012962.1 Photorhabdus asymbiotica
36 1366988 1367200 + NZ_CP040428.1 Jejubacter calystegiae
37 4021886 4022098 + NZ_CP046670.1 Alteromonas mediterranea
38 4150469 4150684 - NZ_LS483422.1 Providencia heimbachae
39 3206307 3206522 - NZ_CP038469.1 Citrobacter tructae
40 4579682 4579894 - NZ_CP045845.1 Kluyvera intermedia
41 1870088 1870300 + NZ_CP018804.1 Histophilus somni
42 118118 118330 + NZ_LN907827.1 Erwinia gerundensis
43 154666 154878 + NZ_LR134340.1 Escherichia marmotae
44 2587377 2587589 + NZ_AP019007.1 Enterobacter oligotrophicus
45 4494537 4494749 - NZ_AP022508.1 Enterobacter bugandensis
46 4593897 4594109 - NZ_CP027986.1 Enterobacter sichuanensis
47 4602006 4602218 - NZ_CP017184.1 Enterobacter roggenkampii
48 2713244 2713456 + NZ_CP025034.2 Enterobacter sp. SGAir0187
49 4713520 4713732 - NZ_CP009756.1 Enterobacter cloacae
50 3105878 3106090 - NZ_CP017279.1 Enterobacter ludwigii
51 3726117 3726329 + NZ_CP045769.1 Enterobacter cancerogenus
52 4957873 4958085 - NZ_CP043318.1 Enterobacter chengduensis
53 4507861 4508076 - NZ_LR134201.1 Cedecea lapagei
54 4931802 4932017 - NZ_CP023525.1 Cedecea neteri
55 3528595 3528810 - NZ_FO704551.1 Xenorhabdus poinarii G6
56 2445974 2446189 - NZ_CP007445.1 Gilliamella apicola
57 2033849 2034061 + NZ_CP016605.1 Bisgaardia hudsonensis
58 3814098 3814310 + NZ_CP008849.1 Alteromonas australica
59 4233280 4233495 - NZ_CP072455.1 Xenorhabdus budapestensis
60 5539633 5539848 - NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1
61 110783 110998 + NZ_CP050150.1 Hafnia alvei
62 4142090 4142302 + NC_004337.2 Shigella flexneri 2a str. 301
63 4150905 4151117 + NZ_CP014322.1 Alteromonas addita
64 4361266 4361478 + NC_015554.1 Alteromonas naphthalenivorans
65 171727 171942 + NC_014306.1 Erwinia billingiae Eb661
66 3500684 3500896 - NZ_CP067057.1 Rahnella aceris
67 4093548 4093760 + NZ_CP019650.1 Microbulbifer agarilyticus
68 3914382 3914594 + NZ_CP031769.1 Salinimonas sediminis
69 1343475 1343690 - NZ_CP065640.1 Serratia rubidaea
70 1090603 1090818 + NZ_CP007044.2 Chania multitudinisentens RB-25
71 4016560 4016772 - NC_013716.1 Citrobacter rodentium ICC168
72 5289900 5290115 - NC_015567.1 Serratia plymuthica AS9
73 3343984 3344196 - NZ_CP023529.1 Lelliottia amnigena
74 204634 204849 + NZ_CP034938.1 Pectobacterium odoriferum
75 2184652 2184864 - NZ_CP044098.1 Citrobacter portucalensis
76 3787059 3787274 + NZ_CP014864.1 Microbulbifer thermotolerans
77 4406599 4406814 - NZ_AP023184.1 Buttiauxella agrestis
78 216781 216996 + NZ_CP065044.1 Pectobacterium aroidearum
79 5149308 5149523 - NZ_CP048784.1 Serratia liquefaciens
80 5204424 5204639 - NZ_LR134494.1 Serratia quinivorans
81 2505948 2506163 - NZ_CP041660.1 Catenovulum sediminis
82 1590114 1590329 - NZ_CP011254.1 Serratia fonticola
83 3203329 3203544 - NZ_CP016176.1 Xenorhabdus hominickii
84 175953 176168 + NZ_CP038498.1 Pectobacterium punjabense
85 1828735 1828950 + NZ_CP047495.1 Pectobacterium brasiliense
86 204326 204541 + NZ_CP051652.1 Pectobacterium carotovorum
87 3487886 3488101 - NZ_CP017482.1 Pectobacterium polaris
88 593275 593487 - NZ_LR134167.1 Avibacterium volantium
89 2442075 2442284 - NC_013166.1 Kangiella koreensis DSM 16069
90 4985294 4985506 - NZ_LR134475.1 Klebsiella aerogenes
91 4660823 4661035 - NC_015968.1 Enterobacter soli
92 2838890 2839102 - NC_009792.1 Citrobacter koseri ATCC BAA-895
93 51433 51645 + NZ_CP061527.1 Shigella dysenteriae
94 3064658 3064870 + NZ_CP057657.1 Escherichia fergusonii
95 4127013 4127225 + NC_000913.3 Escherichia coli str. K-12 substr. MG1655
96 4928632 4928844 + NC_002695.2 Escherichia coli O157:H7 str. Sakai
97 128135 128347 + NZ_CP013990.1 Leclercia adecarboxylata
98 2684795 2685010 + NZ_CP014136.1 Gibbsiella quercinecans
99 209300 209515 + NZ_CP012621.1 Zobellella denitrificans
100 152346 152558 - NZ_CP047491.1 Microbulbifer hydrolyticus
101 1807025 1807237 + NZ_CP023706.1 Edwardsiella tarda
102 917816 918028 - NZ_LT556085.1 Citrobacter amalonaticus
103 5060176 5060391 - NZ_LT906479.1 Serratia ficaria
104 598497 598712 + NZ_CP065435.1 Halomonas sp. SS10-MC5
105 4096089 4096301 + NZ_AP014857.1 Escherichia albertii
106 752417 752629 + NZ_CP045205.1 Citrobacter telavivensis
107 1135093 1135305 + NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
108 804350 804565 + NZ_LR134510.1 Actinobacillus delphinicola
109 4452941 4453153 - NZ_CP054058.1 Scandinavium goeteborgense
110 71222 71434 + NZ_CP016043.1 Edwardsiella hoshinae
111 89139 89351 + NZ_CP047349.1 Proteus terrae subsp. cibarius
112 84808 85023 + NZ_CP071320.1 Serratia ureilytica
113 4316933 4317148 - NZ_CP016948.1 Serratia surfactantfaciens
114 5108361 5108576 - NZ_CP038662.1 Serratia nematodiphila
115 3535597 3535809 + NC_010554.1 Proteus mirabilis HI4320
116 2001596 2001811 - NZ_CP021376.1 Oceanisphaera avium
117 1883335 1883547 - NZ_CP046531.1 Mannheimia ovis
118 5407599 5407811 - NZ_CP054254.1 Klebsiella variicola
119 1358223 1358435 - NZ_CP029206.1 Actinobacillus porcitonsillarum
120 1657821 1658033 + NZ_CP026364.1 Proteus hauseri
121 5115308 5115520 - NZ_CP065838.1 Klebsiella quasipneumoniae
122 90230 90442 + NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
123 1567292 1567504 - NZ_CP042941.1 Atlantibacter hermannii
124 706608 706820 - NZ_CP006954.1 Bibersteinia trehalosi USDA-ARS-USMARC-188
125 1430084 1430296 - NZ_CP006944.1 Mannheimia varigena USDA-ARS-USMARC-1312
126 1951887 1952099 - NZ_CP055305.1 Mannheimia pernigra
127 833189 833401 + NC_021883.1 Mannheimia haemolytica USMARC_2286
128 21010 21225 - NZ_CP015031.1 Basfia succiniciproducens
129 416249 416464 - NC_006300.1 [Mannheimia] succiniciproducens MBEL55E
130 3857853 3858068 - NZ_CP015749.1 Pectobacterium parmentieri
131 1470684 1470899 - NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304
132 3684484 3684696 + NC_012779.2 Edwardsiella ictaluri 93-146
133 1629142 1629354 - NZ_CP006664.1 Edwardsiella anguillarum ET080813
134 4675953 4676168 - NZ_CP009125.1 Pectobacterium atrosepticum
135 3189308 3189520 + NC_018868.3 Simiduia agarivorans SA1 = DSM 21679
136 140276 140488 + NC_010694.1 Erwinia tasmaniensis Et1/99
137 3836086 3836298 - NZ_CP023567.1 Erwinia pyrifoliae
138 165359 165574 + NZ_AP022188.1 Aeromonas media
139 4560020 4560235 - NZ_CP006569.1 Sodalis praecaptivus
140 1173659 1173871 - NZ_CP030753.1 Actinobacillus pleuropneumoniae
141 402825 403037 + NZ_CP007715.1 Actinobacillus equuli subsp. equuli
142 393181 393393 + NZ_CP009159.1 Actinobacillus suis ATCC 33415
143 900290 900502 + NZ_CP014143.1 Microbulbifer aggregans
144 4670334 4670549 - NZ_CP050851.1 Aeromonas hydrophila
145 929136 929351 - NZ_CP023009.1 Lonsdalea britannica
146 1494416 1494631 - NZ_CP021377.1 Oceanisphaera profunda
147 281626 281838 - NZ_LT906463.1 Haemophilus pittmaniae
148 2126486 2126698 - NZ_CP040863.1 Rodentibacter heylii
149 156370 156582 + NC_013961.1 Erwinia amylovora CFBP1430
150 524434 524646 + NZ_CP070624.1 Photobacterium damselae subsp. damselae
151 226860 227072 + NZ_CP009610.1 Haemophilus influenzae
152 667187 667399 - NZ_LS483458.1 Haemophilus haemolyticus
153 270948 271160 + NZ_LS483429.1 Haemophilus aegyptius
154 198453 198668 + NC_017554.1 Pantoea ananatis PA13
155 1726164 1726379 - NZ_CP011104.1 Photorhabdus thracensis
156 3031329 3031544 + NZ_CP044060.1 Aeromonas veronii
157 3286429 3286644 + NZ_CP065745.1 Aeromonas allosaccharophila
158 1046546 1046758 - NZ_CP014056.2 Grimontia hollisae
159 1716630 1716848 + NZ_CP065150.1 Vibrio kanaloae
160 647644 647859 + NZ_CP016180.1 Pasteurella skyensis
161 2250700 2250909 - NZ_CP025120.1 Kangiella profundi
162 3641697 3641912 - NZ_CP065534.1 Lonsdalea populi
163 121653 121868 + NZ_LR134376.1 Aeromonas encheleia
164 1548968 1549189 - NZ_CP019959.1 Vibrio owensii
165 338998 339210 - NZ_CP051548.1 Phytobacter diazotrophicus
166 4453293 4453505 - NZ_CP011602.1 Phytobacter ursingii
167 3132556 3132771 - NZ_CP014226.1 Halomonas chromatireducens
168 3016206 3016421 + NZ_CP049115.1 Pantoea stewartii
169 490386 490598 + NZ_CP028926.1 Pasteurella multocida
170 11811 12023 - NZ_LT906448.1 Pasteurella dagmatis
171 1023216 1023428 - NC_011852.1 Glaesserella parasuis SH0165
172 4229829 4230041 - NZ_CP015581.1 Tatumella citrea
173 3967143 3967358 - NZ_CP014137.1 Brenneria goodwinii
174 4109335 4109547 + NZ_CP044399.1 Moritella marina ATCC 15381
175 3846853 3847068 + NZ_CP040449.1 Aeromonas simiae
176 236955 237170 + NZ_CP040021.1 Salinivibrio kushneri
177 3371428 3371643 - NZ_CP051883.1 Aeromonas salmonicida
178 1891500 1891712 - NZ_CP061280.1 Mannheimia bovis
179 750469 750690 + NZ_CP031093.1 Hydrocarboniclastica marina
180 2858558 2858779 - NZ_CP032093.1 Vibrio alfacsensis
181 326971 327186 + NZ_AP014545.1 Amphritea japonica ATCC BAA-1530
182 2625162 2625383 - NZ_CP009977.1 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
183 1265168 1265380 - NZ_CP015029.1 Frederiksenia canicola
184 1304611 1304823 + NZ_CP015425.1 [Haemophilus] ducreyi
185 3221622 3221834 + NC_016041.1 Glaciecola nitratireducens FR1064
186 130137 130358 - NC_013456.1 Vibrio antiquarius
187 3232882 3233094 - NZ_CP027107.1 Cronobacter sakazakii
188 1299 1511 + NZ_CP013940.1 Cronobacter malonaticus LMG 23826
189 146384 146596 + NZ_CP012257.1 Cronobacter universalis NCTC 9529
190 217397 217609 + NZ_CP012264.1 Cronobacter condimenti 1330
191 3843066 3843278 - NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
192 211552 211764 + NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
193 4602369 4602581 - NC_012560.1 Azotobacter vinelandii DJ
194 703896 704108 - NZ_LS483443.1 Aggregatibacter segnis ATCC 33393
195 545208 545420 + NZ_CP005974.1 Photobacterium gaetbulicola Gung47
196 3860662 3860877 + NZ_CP031961.1 Pseudoalteromonas tunicata
197 4201231 4201446 - NZ_CP061081.1 Marinomonas arctica
198 4535215 4535427 - NZ_CP028897.1 Dongshaea marina
199 3733352 3733567 - NZ_CP034035.1 Brenneria rubrifaciens
200 3001280 3001501 - NZ_CP031781.1 Vibrio parahaemolyticus
201 5740170 5740382 - NZ_AP014862.1 Pseudomonas furukawaii
202 3547826 3548041 - NC_015559.1 Marinomonas posidonica IVIA-Po-181
203 6113559 6113777 - NC_007645.1 Hahella chejuensis KCTC 2396
204 4668902 4669114 - NZ_CP060009.1 Pseudomonas sediminis
205 4489877 4490089 - NZ_CP013124.1 Pseudomonas mendocina S5.2
206 2891954 2892166 + NZ_CP070505.1 Pseudomonas toyotomiensis
207 3258108 3258320 + NZ_CP016337.1 Kosakonia sacchari
208 105067 105279 + NZ_CP063425.1 Kosakonia pseudosacchari
209 3030141 3030353 - NZ_CP045300.1 Kosakonia arachidis
210 5449939 5450151 + NZ_CP015113.1 Kosakonia radicincitans
211 547742 547954 + NZ_CP068551.1 Pseudomonas khazarica
212 5616270 5616482 - NZ_CP043311.1 Pseudomonas lalkuanensis
213 241180 241398 + NZ_CP039700.1 Vibrio cyclitrophicus
214 2084319 2084531 + NZ_CP053416.1 Salmonella bongori
215 1632421 1632636 + NZ_CP016604.1 Otariodibacter oris
216 3607460 3607672 - NZ_CP031416.1 Gallaecimonas mangrovi
217 4305776 4305988 + NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
218 175910 176125 + NZ_CP034148.1 Pantoea agglomerans
219 197114 197329 + NZ_CP038853.1 Pantoea vagans
220 4404182 4404394 - NZ_CP026377.1 Mixta gaviniae
221 3542288 3542500 - NZ_CP028271.1 Mixta intestinalis
222 36689 36901 + NZ_CP012871.1 [Enterobacter] lignolyticus
223 5654999 5655211 - NZ_AP022642.1 Pseudomonas otitidis
224 4386051 4386266 - NZ_LR215729.2 Pseudomonas marincola
225 363125 363337 + NZ_CP010975.1 Kangiella geojedonensis
226 2315317 2315532 - NZ_CP037953.1 Permianibacter aggregans
227 365471 365680 + NZ_CP012418.1 Kangiella sediminilitoris
228 4098354 4098566 - NZ_CP061511.1 Mixta calida
229 1464822 1465037 - NZ_CP019628.1 Pseudoalteromonas aliena
230 3120801 3121013 - NZ_CP051180.1 Ferrimonas lipolytica
231 2993629 2993844 - NZ_LT960611.1 Vibrio tapetis subsp. tapetis
232 3050875 3051093 - NC_011753.2 Vibrio atlanticus
233 720279 720491 + NZ_CP011835.1 Azotobacter chroococcum
234 2892535 2892750 - NC_007481.1 Pseudoalteromonas translucida
235 3185290 3185505 - NZ_CP011036.1 Pseudoalteromonas nigrifaciens
236 2811358 2811576 + NZ_CP016414.1 Vibrio scophthalmi
237 675981 676193 + NZ_CP034015.1 Shewanella livingstonensis
238 1757635 1757847 + NZ_CP019706.1 Pantoea alhagi
239 5276865 5277077 - NZ_CP014007.2 Kosakonia oryzae
240 3076270 3076488 + NZ_CP009354.1 Vibrio tubiashii ATCC 19109
241 3234970 3235185 - NZ_CP032090.1 Pseudoalteromonas donghaensis
242 2562518 2562733 + NZ_CP022741.1 Vibrio qinghaiensis
243 499720 499932 + NC_011566.1 Shewanella piezotolerans WP3
244 178466 178681 + NZ_CP029347.1 Saliniradius amylolyticus
245 2890235 2890447 - NZ_LS483250.1 Moritella yayanosii
246 2003978 2004190 - NZ_CP045302.1 Azotobacter salinestris
247 3123196 3123411 - NZ_CP048602.1 Halomonas piezotolerans
248 3326057 3326269 + NZ_CP017689.1 Thalassotalea crassostreae
249 4597037 4597249 - NC_003910.7 Colwellia psychrerythraea 34H
250 4324390 4324602 - NZ_CP041036.1 Shewanella polaris
251 422122 422337 + NZ_CP011025.1 Pseudoalteromonas arctica A 37-1-2
252 207787 208005 + NZ_CP040990.1 Vibrio furnissii
253 373429 373644 + NZ_CP027523.1 Pseudoalteromonas carrageenovora
254 2938466 2938678 - NZ_CP072844.1 Psychrosphaera aestuarii
255 226387 226602 + NZ_CP042220.2 Dickeya poaceiphila
256 3736772 3736987 - NZ_CP054301.1 Marinomonas primoryensis
257 3052424 3052642 + NZ_CP047475.1 Vibrio astriarenae
258 5687105 5687320 - NC_002516.2 Pseudomonas aeruginosa PAO1
259 2559537 2559755 - NC_008260.1 Alcanivorax borkumensis SK2
260 203236 203451 + NZ_CP071325.1 Photobacterium ganghwense
261 319849 320064 + NZ_CP011041.1 Pseudoalteromonas tetraodonis
262 326661 326876 + NZ_CP011030.1 Pseudoalteromonas issachenkonii
263 360780 360995 + NZ_CP011028.1 Pseudoalteromonas espejiana DSM 9414
264 704474 704689 - NZ_CP048812.1 Halomonas socia
265 499360 499572 + NZ_CP020472.1 Shewanella japonica
266 2795092 2795313 + NZ_AP019651.1 Vibrio taketomensis
267 2194412 2194624 + NZ_CP018139.1 Halomonas aestuarii
268 2827670 2827888 - NZ_CP018312.1 Vibrio rotiferianus
269 1961458 1961676 - NZ_CP025792.1 Vibrio jasicida 090810c
270 507652 507870 + NC_010995.1 Cellvibrio japonicus Ueda107
271 527871 528083 + NZ_CP022358.1 Shewanella bicestrii
272 3223273 3223491 - NZ_CP009533.1 Pseudomonas rhizosphaerae
273 4466787 4466999 - NC_008345.1 Shewanella frigidimarina NCIMB 400
274 4646138 4646353 - NZ_CP031560.1 Dickeya dianthicola
275 572959 573171 + NZ_CP037951.1 Parashewanella tropica
276 203019 203237 + NZ_AP018689.1 Vibrio aphrogenes
277 482784 483005 + NZ_CP009467.1 Vibrio harveyi
278 3057834 3058058 + NZ_CP070518.1 Acinetobacter calcoaceticus
279 670114 670326 + NZ_CP013106.1 Halomonas huangheensis
280 3002425 3002643 - NZ_CP014035.2 Vibrio fluvialis
281 2740209 2740424 - NZ_CP011039.1 Pseudoalteromonas spongiae UST010723-006
282 210390 210608 - NZ_CP045350.1 Vibrio aquimaris
283 3424788 3425003 - NZ_CP013187.1 Pseudoalteromonas phenolica
284 3076561 3076782 - NZ_AP019657.1 Vibrio ponticus
285 1350348 1350572 + NZ_CP030880.1 Acinetobacter haemolyticus
286 3704410 3704622 + NZ_CP041783.1 Shewanella donghaensis
287 566566 566778 + NC_016901.1 Shewanella baltica OS678
288 1566447 1566662 + NZ_CP072425.1 Pseudoalteromonas viridis
289 2421995 2422207 + NZ_CP020465.1 Cognaticolwellia beringensis
290 2181828 2182052 - NC_005966.1 Acinetobacter baylyi ADP1
291 2761532 2761744 + NZ_CP036200.1 Shewanella maritima
292 303370 303591 - NZ_CP046268.1 Vibrio spartinae
293 1699246 1699461 - NZ_CP022684.1 Ketobacter alkanivorans
294 4407422 4407637 - NC_012880.1 Musicola paradisiaca Ech703
295 1153506 1153730 + NZ_CP065820.1 Acinetobacter seifertii
296 1105148 1105372 + NC_014259.1 Acinetobacter oleivorans DR1
297 365449 365667 + NZ_CP043869.1 Neptunomonas concharum
298 1363458 1363685 + NZ_CP032134.1 Acinetobacter chinensis
299 925222 925440 + NZ_CP043042.1 Marinobacter fonticola
300 4294871 4295086 - NZ_LT615367.1 Dickeya aquatica
301 1065047 1065271 + NZ_CP045650.1 Acinetobacter wanghuae
302 1802299 1802523 + NZ_CP012808.1 Acinetobacter equi
303 1098357 1098581 + NZ_CP049916.1 Acinetobacter lanii
304 2583549 2583770 - NZ_CP017715.1 Marinobacter salinus
305 275069 275287 + NZ_CP030788.1 Vibrio campbellii
306 480417 480635 + NZ_CP056030.1 Pseudomonas eucalypticola
307 3996670 3996882 - NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
308 1403994 1404206 + NZ_CP020038.1 Agarilytica rhodophyticola
309 4431176 4431391 - NZ_CP025799.1 Dickeya zeae
310 447217 447432 + NZ_CP015839.1 Marinobacterium aestuarii
311 4412759 4412971 - NZ_CP046378.1 Shewanella algae
312 441330 441551 + NZ_CP068034.2 Pseudomonas syringae
313 361212 361433 + NZ_CP042804.1 Pseudomonas amygdali pv. tabaci str. ATCC 11528
314 461076 461300 + NZ_CP041970.1 Acinetobacter dispersus
315 1880794 1881009 - NZ_CP015137.1 Dickeya solani IPO 2222
316 1222563 1222787 + NZ_CP029397.2 Acinetobacter defluvii
317 2047799 2048023 - NC_016603.1 Acinetobacter pittii PHEA-2
318 2280870 2281094 - NZ_CP035934.2 Acinetobacter cumulans
319 1240536 1240760 + NZ_CP024632.1 Acinetobacter junii
320 4112699 4112914 - NC_015276.1 Marinomonas mediterranea MMB-1
321 3057253 3057465 + NZ_CP034759.1 Litorilituus sediminis
322 3312976 3313191 - NZ_AP022843.1 Halomonas hydrothermalis
323 3556032 3556247 - NZ_CP065135.1 Halomonas venusta
324 510019 510240 + NZ_LS999205.1 Pseudomonas protegens CHA0
325 3124084 3124308 + NZ_CP040105.1 Acinetobacter nosocomialis M2
326 1076465 1076689 + NZ_CP015121.1 Acinetobacter baumannii
327 2970934 2971152 + NC_011312.1 Aliivibrio salmonicida LFI1238
328 3538039 3538251 - NC_008709.1 Psychromonas ingrahamii 37
329 542021 542233 + NC_012691.1 Tolumonas auensis DSM 9187
330 802813 803037 + NZ_CP011494.1 Marinobacter psychrophilus
331 138156 138371 + NC_012912.1 Dickeya chrysanthemi Ech1591
332 651634 651849 + NZ_CP014158.1 Pseudomonas citronellolis
333 4683616 4683828 - NC_010334.1 Shewanella halifaxensis HAW-EB4
334 2628789 2629016 - NZ_CP016895.1 Acinetobacter larvae
335 555687 555902 + NZ_CP047698.1 Pseudomonas knackmussii
336 184405 184620 + NZ_CP045720.1 Pantoea eucalypti
337 474422 474634 + NZ_CP069213.1 Shewanella litorisediminis
338 552877 553089 + NC_008700.1 Shewanella amazonensis SB2B
339 1092210 1092434 + NZ_CP053391.1 Acinetobacter lactucae
340 5601030 5601251 - NZ_CP007039.1 Pseudomonas cichorii JBC1
341 3997359 3997571 - NC_007954.1 Shewanella denitrificans OS217
342 1397266 1397478 - NZ_CP012362.1 Oblitimonas alkaliphila
343 237690 237908 + NZ_AP018685.1 Vibrio rumoiensis
344 3086304 3086519 + NZ_CP009460.1 Dickeya fangzhongdai
345 3057357 3057578 - NZ_CP044069.1 Vibrio vulnificus
346 2348159 2348383 - NZ_CP049801.1 Acinetobacter shaoyimingii
347 4733452 4733664 + NZ_CP020373.1 Shewanella khirikhana
348 1557561 1557773 + NZ_CP029822.1 Entomomonas moraniae
349 1867740 1867964 + NZ_AP014630.1 Acinetobacter guillouiae
350 3418987 3419199 - NC_007912.1 Saccharophagus degradans 2-40
351 216863 217078 + NC_014500.1 Dickeya dadantii 3937
352 3979195 3979410 - NC_014541.1 Ferrimonas balearica DSM 9799
353 554492 554707 + NZ_CP061941.1 Marinomonas algicola
354 843760 843978 + NZ_CP021425.1 Oleiphilus messinensis
355 1717001 1717216 - NZ_CP070273.1 Marinomonas foliarum
356 2222292 2222507 + NZ_CP059082.1 Halomonas titanicae
357 5359655 5359867 - NC_010506.1 Shewanella woodyi ATCC 51908
358 5845754 5845981 - NC_004578.1 Pseudomonas syringae pv. tomato str. DC3000
359 279409 279636 + NZ_CP067022.1 Pseudomonas cannabina pv. alisalensis
360 77846 78061 - NZ_CP048833.1 Pseudomonas multiresinivorans
361 585580 585789 - NC_004545.1 Buchnera aphidicola str. Bp (Baizongia pistaciae)
362 4591015 4591227 - NC_009901.1 Shewanella pealeana ATCC 700345
363 4119338 4119556 - NZ_CP036422.1 Halioglobus maricola
364 406842 407054 + NZ_CP022272.1 Shewanella marisflavi
365 655695 655907 + NC_009831.1 Shewanella sediminis HAW-EB3
366 346618 346833 - NZ_CP009888.1 Pseudoalteromonas piratica
367 2998913 2999131 - NZ_CP031415.1 Saccharospirillum mangrovi
368 2091876 2092094 - NZ_CP046793.1 Vibrio metschnikovii
369 5872614 5872829 - NZ_CP048878.1 Spartinivicinus ruber
370 317030 317233 + NC_002977.6 Methylococcus capsulatus str. Bath
371 4420616 4420834 - NC_018691.1 Alcanivorax dieselolei B5
372 758140 758352 + NZ_CP037952.1 Parashewanella spongiae
373 440476 440691 - NZ_CP042382.1 Pistricoccus aurantiacus
374 1498949 1499173 + NZ_CP071766.1 Acinetobacter towneri
375 1961739 1961963 - NZ_CP044483.1 Acinetobacter schindleri
376 2485833 2486054 + NZ_CP048711.1 Kineobactrum salinum
377 3204533 3204751 + NZ_AP014635.1 Vibrio tritonius
378 355372 355587 + NZ_CP033065.1 Pseudoalteromonas agarivorans
379 362037 362252 + NZ_CP023464.1 Pseudoalteromonas atlantica
380 3250003 3250215 - NC_014532.2 Halomonas elongata DSM 2581
381 3802682 3802909 - NZ_CP014544.1 Zhongshania aliphaticivorans
382 431296 431508 + NC_009092.1 Shewanella loihica PV-4
383 138703 138927 - NZ_CP068345.1 Succinivibrio dextrinosolvens
384 337648 337860 + NC_014012.1 Shewanella violacea DSS12
385 2367280 2367498 + NZ_CP035688.1 Vibrio metoecus
386 2708086 2708304 + NZ_AP014524.1 Vibrio cholerae MS6
387 2927616 2927825 - NZ_CP013189.1 Pseudohongiella spirulinae
388 27664 27876 - NZ_LR134424.1 Legionella adelaidensis
389 2327343 2327558 + NZ_CP072133.1 Pseudoalteromonas xiamenensis
390 2620074 2620304 - NZ_CP025491.2 Legionella sainthelensi
391 2942565 2942777 - NZ_LN681225.1 Legionella hackeliae
392 3443579 3443806 - NZ_LN614827.1 Legionella fallonii LLAP-10
393 3374496 3374708 - NZ_CP021435.1 Halomonas beimenensis
394 6024236 6024448 - NZ_CP014782.1 Shewanella psychrophila
395 3241222 3241428 + NZ_CP060084.1 Teredinibacter haidensis
396 3685949 3686170 - NZ_CP020931.1 Marinobacter salarius
397 490031 490246 - NZ_CP022355.1 Paraphotobacterium marinum
398 3250106 3250306 - NZ_CP011971.1 Steroidobacter denitrificans
399 1202432 1202641 + NZ_CP031518.1 Treponema ruminis
400 828898 829110 + NZ_AP018933.1 Zymobacter palmae
401 2168278 2168493 + NZ_CP019343.1 Oceanicoccus sagamiensis
402 3369035 3369244 - NC_020888.1 Thalassolituus oleivorans MIL-1
403 504864 505082 + NZ_CP051487.1 Pseudomonas umsongensis
404 1548735 1548947 - NZ_CP060092.1 Teredinibacter purpureus
405 1311431 1311646 + NC_015385.1 Treponema succinifaciens DSM 2489
406 680306 680521 - NZ_CP009654.1 Francisella frigiditurris
407 1020953 1021171 + NZ_CP007142.1 Gynuella sunshinyii YC6258
408 402289 402498 + NZ_LN614830.1 Tatlockia micdadei
409 304937 305137 + NC_015572.1 Methylomonas methanica MC09
410 3476687 3476917 - NZ_CP005960.1 Pseudomonas mandelii JR-1
411 2636871 2637089 + NC_006512.1 Idiomarina loihiensis L2TR
412 5723194 5723397 + NZ_AP017928.1 Methylocaldum marinum
413 480822 481043 + NC_017506.1 Marinobacter adhaerens HP15
414 823712 823912 - NZ_CP043929.1 Methylomonas rhizoryzae
415 2514805 2515035 - NZ_CP038254.1 Legionella israelensis
416 2444927 2445142 + NZ_CP023559.1 Salinicola tamaricis
417 2535812 2536024 - NZ_LT906451.1 Legionella lansingensis
418 355011 355226 + NZ_CP051183.1 Bermanella marisrubri
419 305003 305218 - NC_023029.1 Francisella orientalis LADL--07-285A
420 2644775 2644990 + NZ_CP033078.1 Vibrio zhugei
421 1958982 1959209 + NC_012108.1 Desulfobacterium autotrophicum HRM2
422 672092 672307 + NC_007963.1 Chromohalobacter salexigens DSM 3043
423 707906 708133 + NZ_CP013742.1 Legionella pneumophila
424 255508 255723 - NZ_CP022375.1 Francisella opportunistica
425 2488609 2488812 - NC_019978.1 Halobacteroides halobius DSM 5150
426 259582 259797 - NC_017449.1 Francisella hispaniensis
427 2607271 2607471 - NZ_CP034118.1 Staphylospora marina
428 5451194 5451406 - NZ_CP046621.1 Pseudomonas alkylphenolica
429 3094934 3095149 - NZ_CP011797.1 Reinekea forsetii
430 1164014 1164214 + NZ_CP025286.1 Ethanoligenens harbinense YUAN-3
431 894955 895155 + NZ_CP035467.1 Methylotuvimicrobium buryatense
432 1171075 1171272 - NZ_CP021434.1 Tumebacillus avium
433 220665 220868 - NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787
434 894659 894871 + NZ_CP054142.1 Treponema parvum
435 2485972 2486178 - NC_015500.1 Treponema brennaborense DSM 12168
436 530980 531195 - NZ_CP010427.1 Allofrancisella guangzhouensis
437 276649 276864 - NC_015696.1 Francisella salina
438 1520938 1521153 + NZ_CP043552.1 Francisella marina
439 412838 413053 - NZ_CP021781.1 Francisella adeliensis
440 1458640 1458855 + NZ_CP038017.1 Allofrancisella frigidaquae
441 356468 356665 + NZ_CP022657.1 Tumebacillus algifaecis
442 511833 512048 - NC_016893.1 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
443 150313 150513 - NZ_HF545617.1 Ruminococcus bicirculans
444 873771 873989 + NZ_CP013290.1 Janibacter indicus
445 2558640 2558843 + NC_016048.1 Oscillibacter valericigenes Sjm18-20
446 1528989 1529204 + NZ_CP038241.1 Allofrancisella inopinata
447 552694 552894 + NZ_AP017312.1 Aneurinibacillus soli
448 1024018 1024236 - NZ_CP011786.1 Bifidobacterium actinocoloniiforme DSM 22766
449 1540718 1540930 + NZ_CP011853.1 Gordonia phthalatica
450 319037 319273 + NZ_CP014870.1 Pseudomonas silesiensis
451 2962476 2962676 - NZ_CP046996.1 Dehalobacter restrictus
452 2553493 2553708 - NZ_CP016539.2 Planococcus plakortidis
453 2621315 2621530 - NZ_CP016538.2 Planococcus maritimus
454 2642599 2642814 - NZ_CP059540.1 Planococcus maritimus
455 2436170 2436385 - NZ_CP013659.2 Planococcus rifietoensis
456 749751 749963 - NZ_CP066049.1 Actinomyces naeslundii
457 645222 645437 + NZ_CP044427.1 Ornithinimicrobium pratense
458 3514031 3514234 + NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1
459 341339 341539 + NC_013895.2 Mageeibacillus indolicus UPII9-5
460 2655832 2656047 - NZ_CP016543.2 Planococcus donghaensis
461 2751661 2751876 - NZ_CP016537.2 Planococcus halocryophilus
462 2453708 2453923 + NZ_CP013661.2 Planococcus kocurii
463 2806176 2806391 - NZ_CP019401.1 Planococcus faecalis
464 1738081 1738281 + NC_014833.1 Ruminococcus albus 7 = DSM 20455
465 3557602 3557808 - NZ_CP036250.1 Egicoccus halophilus
466 334851 335048 + NZ_CP007452.1 Peptoclostridium acidaminophilum DSM 3953
467 1403016 1403246 + NZ_CP019066.1 Tsukamurella tyrosinosolvens
468 3341649 3341852 - NZ_CP016502.1 Acetivibrio thermocellus DSM 2360
469 858989 859207 + NZ_CP033325.1 Georgenia faecalis
470 296105 296320 - NZ_CP016796.1 Francisella uliginis
471 1165901 1166116 + NZ_CP012505.1 Francisella persica ATCC VR-331
472 558118 558330 + NZ_CP028341.1 Bifidobacterium adolescentis
473 515376 515588 + NZ_AP012325.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
474 2920631 2920837 - NZ_CP048436.1 Flavonifractor plautii
475 358610 358837 - NC_007512.1 Pelodictyon luteolum DSM 273
476 1596077 1596289 - NZ_LR134477.1 Actinomyces viscosus
477 608862 609074 + NZ_CP022544.1 Bifidobacterium pseudolongum
478 409802 410014 + NZ_CP070228.1 Arcanobacterium phocisimile
479 2747435 2747638 - NZ_CP011367.1 Thioalkalivibrio versutus
480 529287 529499 + NZ_CP066060.1 Actinomyces oris
481 1594584 1594796 - NC_018720.1 Bifidobacterium asteroides PRL2011
482 2264010 2264210 - NZ_CP030926.1 Peribacillus butanolivorans
483 2079457 2079669 - NZ_CP025227.1 Actinomyces wuliandei
484 1646310 1646522 + NZ_CP027433.1 Gordonia iterans
485 1269457 1269687 + NC_014158.1 Tsukamurella paurometabola DSM 20162
486 2454466 2454681 + NZ_CP015108.1 Sporosarcina ureae
487 1211823 1212023 + NZ_CP030777.1 Faecalibacterium prausnitzii
488 308533 308745 - NZ_CP062948.1 Bifidobacterium lemurum
489 579383 579595 + NZ_CP025199.1 Bifidobacterium pseudocatenulatum
490 2493401 2493613 + NZ_CP062938.1 Bifidobacterium eulemuris
491 1795718 1795930 - NZ_LS483427.1 Arcanobacterium haemolyticum
492 454454 454666 + NZ_AP012322.1 Bifidobacterium angulatum DSM 20098 = JCM 7096
493 2422757 2422960 - NZ_CP068170.1 Erysipelatoclostridium ramosum
494 1446385 1446612 - NZ_CP033972.1 Gordonia insulae
495 353459 353671 + NZ_LR134357.1 Actinomyces israelii
496 5542764 5542988 + NC_016109.1 Kitasatospora setae KM-6054
497 1816730 1816963 + NZ_LT906450.1 Rhodococcus rhodochrous
498 1278855 1279067 - NZ_CP018044.1 Bifidobacterium choerinum
499 1487154 1487381 + NC_002932.3 Chlorobaculum tepidum TLS
500 1766728 1766946 + NZ_CP045572.1 Nonomuraea nitratireducens
501 354297 354500 + NZ_AP019309.1 Intestinibaculum porci
502 2958441 2958653 + NZ_LR134350.1 Actinomyces howellii
503 1461939 1462163 + NZ_CP051486.1 Streptomyces pratensis
504 1771448 1771666 + NC_013595.1 Streptosporangium roseum DSM 43021
505 1292378 1292590 - NZ_CP006018.1 Bifidobacterium indicum LMG 11587 = DSM 20214
506 1327922 1328134 - NZ_CP007287.1 Bifidobacterium coryneforme
507 2036061 2036279 + NC_011059.1 Prosthecochloris aestuarii DSM 271
508 627626 627850 - NZ_CP017305.1 Chlorobaculum limnaeum
509 3542673 3542876 - NZ_CP007031.1 Marichromatium purpuratum 984
510 697897 698109 + NZ_AP012326.1 Bifidobacterium dentium JCM 1195 = DSM 20436
511 514744 514956 + NZ_CP020468.1 Actinomyces gaoshouyii
512 2015793 2016008 - NZ_CP041091.1 Nocardioides sambongensis
513 769808 770020 + NZ_AP012331.1 Bifidobacterium scardovii JCM 12489 = DSM 13734
514 4050331 4050543 - NZ_CP027114.1 Gordonia alkanivorans
515 4179664 4179876 - NZ_CP059694.1 Gordonia rubripertincta
516 2729628 2729831 - NC_008346.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
517 666117 666326 + NC_014014.1 Mycoplasma crocodyli MP145
518 470514 470729 - NZ_CP022132.1 Francisella halioticida
519 1333344 1333556 - NZ_AP012333.1 Parascardovia denticolens DSM 10105 = JCM 12538
520 4411494 4411718 + NZ_CP009922.3 Streptomyces xiamenensis
521 1896747 1896953 + NZ_LT828648.1 Nitrospira japonica
522 1840511 1840723 - NZ_CP026999.1 Bifidobacterium longum
523 1737276 1737488 - NZ_CP006712.1 Bifidobacterium breve JCM 7017
524 997696 997926 + NC_014761.1 Oceanithermus profundus DSM 14977
525 1022074 1022289 - NC_006461.1 Thermus thermophilus HB8
526 967991 968206 + NZ_CP014141.1 Thermus parvatiensis
527 306336 306554 - NZ_CP030103.1 Mycoplasma cloacale
528 1411980 1412210 - NC_015387.1 Marinithermus hydrothermalis DSM 14884
529 6419785 6420006 + NZ_CP031455.1 Streptomyces olivoreticuli subsp. olivoreticuli
530 557945 558160 + NZ_AP012334.1 Scardovia inopinata JCM 12537
531 250295 250507 - NZ_CP014228.1 Actinomyces radicidentis
532 1044840 1045055 - NZ_CP010822.1 Thermus aquaticus Y51MC23
533 773048 773263 - NZ_CP038452.1 Thermus caldilimi
534 1350715 1350930 - NC_019386.1 Thermus oshimai JL-2
535 1942671 1942886 + NZ_CP016312.1 Thermus brockianus
536 125228 125446 + NZ_CP030140.1 Mycoplasma anseris
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NZ_CP011078.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF17764.3 0.65 346 226 opposite-strand 3'DNA-binding domain (3'BD)
2 PF18074.3 0.65 346 226 opposite-strand Primosomal protein N C-terminal domain
3 PF00270.31 0.66 353 226.0 opposite-strand DEAD/DEAH box helicase
4 PF04851.17 0.66 352 226 opposite-strand Type III restriction enzyme, res subunit
5 PF18319.3 0.65 347 226.0 opposite-strand PriA DNA helicase Cys-rich region (CRR) domain
6 PF05036.15 0.6 321 3859 opposite-strand SPOR domain
++ More..