Result : C3PP81
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | CP001612.1 |
| Organism | Rickettsia africae (strain ESF-5) |
| Left | 930496 |
| Right | 930774 |
| Strand | - |
| Nucleotide Sequence | ATGGCTAATCATTCTTCAGCAAAAAAAGCTGCTAGACAAACAGTAAAAAGAACTCTAATCAATAAAAAACGATCTAGTGCAATAAAAACTTTTATAAAGAAAGTTGTACATGAAATCAGTCTTGGTAATAAAGAAAATGCTAACATAGCTTTATCTGTTGCTCAGTCTAAGATAATGCAAGGTGTGAAAAAAAATATAATTAAATTAAATACCGCCTCAAGAAAAATCAGCAGATTATCAAGGCAAATAAAAAGTTTGAAAGTAAATAACACTTTATAG |
| Sequence | MANHSSAKKAARQTVKRTLINKKRSSAIKTFIKKVVHEISLGNKENANIALSVAQSKIMQGVKKNIIKLNTASRKISRLSRQIKSLKVNNTL |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | 19379498 |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | C3PP81 |
| ORF Length (Amino Acid) | 92 |
++ More..
| Conservation Analysis |
No. of Species: 46
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 928432 | 928710 | - | NC_010263.3 | Rickettsia rickettsii str. Iowa |
| 2 | 930264 | 930542 | - | NC_016639.1 | Rickettsia slovaca 13-B |
| 3 | 936783 | 937061 | - | NZ_AP019864.1 | Rickettsia heilongjiangensis |
| 4 | 920435 | 920713 | - | NC_003103.1 | Rickettsia conorii str. Malish 7 |
| 5 | 1283431 | 1283703 | - | NZ_LN794217.1 | Rickettsia monacensis |
| 6 | 988561 | 988833 | - | NZ_AP019563.1 | Rickettsia asiatica |
| 7 | 899986 | 900258 | - | NC_009881.1 | Rickettsia akari str. Hartford |
| 8 | 516183 | 516455 | + | NC_017058.1 | Rickettsia australis str. Cutlack |
| 9 | 855162 | 855434 | - | NC_016929.1 | Rickettsia canadensis str. CA410 |
| 10 | 814749 | 815021 | - | NC_017066.1 | Rickettsia typhi str. TH1527 |
| 11 | 804524 | 804796 | - | NC_017049.1 | Rickettsia prowazekii str. Chernikova |
| 12 | 1140102 | 1140365 | - | NC_007940.1 | Rickettsia bellii RML369-C |
| 13 | 4014116 | 4014388 | + | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 14 | 4038817 | 4039080 | + | NZ_CP040818.1 | Paraoceanicella profunda |
| 15 | 2353070 | 2353333 | + | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 16 | 3439679 | 3439945 | + | NZ_CP030126.1 | Indioceanicola profundi |
| 17 | 5868392 | 5868652 | + | NZ_CP030265.1 | Skermanella pratensis |
| 18 | 981 | 1241 | - | NZ_CP029353.1 | Azospirillum thermophilum |
| 19 | 1113377 | 1113652 | + | NZ_CP030918.1 | Paracoccus suum |
| 20 | 4647969 | 4648235 | + | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 21 | 3890778 | 3891041 | + | NZ_CP054599.1 | Sulfitobacter pseudonitzschiae |
| 22 | 1851665 | 1851934 | + | NZ_CP020612.1 | Paracoccus contaminans |
| 23 | 863454 | 863714 | + | NZ_CP012401.1 | Azospirillum thiophilum |
| 24 | 5831670 | 5831936 | + | NZ_AP019700.1 | Stella humosa |
| 25 | 629671 | 629937 | + | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 26 | 717343 | 717606 | - | NZ_CP007481.1 | Neorickettsia helminthoeca str. Oregon |
| 27 | 3307983 | 3308249 | + | NZ_CP021404.1 | Pacificitalea manganoxidans |
| 28 | 3543739 | 3544005 | + | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 29 | 3314406 | 3314672 | + | NZ_CP046908.1 | Stappia indica |
| 30 | 1318316 | 1318585 | - | NZ_CP045073.1 | Paracoccus kondratievae |
| 31 | 2655629 | 2655889 | + | NZ_CP029829.1 | Azospirillum ramasamyi |
| 32 | 3680337 | 3680606 | + | NZ_LN606600.1 | Acetobacter senegalensis |
| 33 | 3259905 | 3260168 | + | NZ_CP015230.1 | Epibacterium mobile F1926 |
| 34 | 2802753 | 2803016 | - | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 35 | 1966924 | 1967193 | - | NZ_CP060244.1 | Entomobacter blattae |
| 36 | 618395 | 618664 | - | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 37 | 91400 | 91660 | - | NZ_CP054619.1 | Azospirillum oryzae |
| 38 | 4416313 | 4416576 | + | NZ_CP033219.1 | Parasedimentitalea marina |
| 39 | 3171498 | 3171761 | - | NZ_CP041159.1 | Leisingera aquaemixtae |
| 40 | 4144579 | 4144842 | + | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
| 41 | 163518 | 163781 | + | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 42 | 2024031 | 2024294 | - | NZ_CP049037.1 | Pseudohalocynthiibacter aestuariivivens |
| 43 | 3287519 | 3287782 | + | NZ_CP003984.1 | Planktomarina temperata RCA23 |
| 44 | 1968675 | 1968947 | + | NZ_CP053708.1 | Lichenicola cladoniae |
| 45 | 2442949 | 2443218 | - | NZ_CP025430.1 | Paracoccus zhejiangensis |
| 46 | 1380268 | 1380534 | + | NZ_CP022684.1 | Ketobacter alkanivorans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP040818.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01149.26 | 0.67 | 31 | 1057 | same-strand | Formamidopyrimidine-DNA glycosylase N-terminal domain |
| 2 | PF06831.16 | 0.67 | 31 | 1057 | same-strand | Formamidopyrimidine-DNA glycosylase H2TH domain |
++ More..