Result : C3PGA2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Prokaryotic ubiquitin-like protein Pup (Bacterial ubiquitin-like modifier) |
| NCBI Accession ID | CP001601.1 |
| Organism | Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) (Corynebacterium nigricans) |
| Left | 1401819 |
| Right | 1402010 |
| Strand | + |
| Nucleotide Sequence | ATGAGCGGACAGCAGTCTCAGATCAACGCCGGTGGCGGCAACGGTCAAGGAGGCGACACTCCGGAGTTCGACGCCGGACAAGTCAGCATCAACAGCGCGGGTACCGATGACCTCCTCGATGAGATTGACGGCCTTTTGGAGTCCAATGCCGAGGAGTTCGTTCGCTCCTACGTCCAAAAGGGCGGCGAATAA |
| Sequence | MSGQQSQINAGGGNGQGGDTPEFDAGQVSINSAGTDDLLDEIDGLLESNAEEFVRSYVQKGGE |
| Source of smORF | Swiss-Prot |
| Function | Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. {ECO:0000255|HAMAP-Rule:MF_02106}. |
| Pubmed ID | 20137072 |
| Domain | CDD:391659 |
| Functional Category | Others |
| Uniprot ID | C3PGA2 |
| ORF Length (Amino Acid) | 63 |
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| Conservation Analysis |
No. of Species: 72
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1401819 | 1402010 | + | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 2 | 1454009 | 1454200 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 3 | 1355717 | 1355908 | - | NZ_LS483460.1 | Corynebacterium minutissimum |
| 4 | 231526 | 231717 | - | NZ_CP014635.1 | Corynebacterium simulans |
| 5 | 1268129 | 1268320 | - | NZ_CP011311.1 | Corynebacterium camporealensis |
| 6 | 1361110 | 1361301 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 7 | 1294556 | 1294747 | - | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 8 | 1596863 | 1597054 | - | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 9 | 1377047 | 1377238 | + | NZ_CP009249.1 | Corynebacterium phocae |
| 10 | 1232180 | 1232374 | - | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 11 | 1216960 | 1217154 | - | NZ_LR738855.1 | Corynebacterium rouxii |
| 12 | 1392898 | 1393089 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 13 | 1705868 | 1706059 | - | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 14 | 1477800 | 1477994 | - | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 15 | 231731 | 231925 | - | NZ_LT906443.1 | Corynebacterium ulcerans |
| 16 | 1392931 | 1393122 | - | NZ_CP009251.1 | Corynebacterium stationis |
| 17 | 1538249 | 1538443 | - | NZ_CP015622.1 | Corynebacterium crudilactis |
| 18 | 1353738 | 1353926 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 19 | 1312971 | 1313156 | - | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 20 | 1220794 | 1220970 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 21 | 1288450 | 1288647 | - | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 22 | 1211425 | 1211610 | + | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 23 | 1455506 | 1455697 | - | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 24 | 1082800 | 1082988 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 25 | 1186451 | 1186633 | - | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 26 | 1210750 | 1210935 | + | NZ_CP035299.1 | Corynebacterium pelargi |
| 27 | 1126280 | 1126474 | - | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 28 | 1471626 | 1471817 | - | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 29 | 1491580 | 1491774 | - | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 30 | 1253411 | 1253626 | - | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 31 | 1936091 | 1936279 | + | NZ_CP038157.1 | Corynebacterium sanguinis |
| 32 | 1096692 | 1096880 | - | NZ_CP011312.1 | Corynebacterium kutscheri |
| 33 | 1541902 | 1542093 | - | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 34 | 1402043 | 1402231 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 35 | 1318909 | 1319103 | + | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 36 | 1710006 | 1710200 | - | NZ_AP017369.1 | Corynebacterium suranareeae |
| 37 | 1030668 | 1030868 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 38 | 1572333 | 1572527 | + | NZ_LS483459.1 | Corynebacterium jeikeium |
| 39 | 1450804 | 1450980 | - | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 40 | 1823041 | 1823229 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 41 | 1166412 | 1166579 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 42 | 1798132 | 1798308 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 43 | 853029 | 853214 | + | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 44 | 136298 | 136489 | - | NZ_CP022316.1 | Brachybacterium avium |
| 45 | 1147504 | 1147665 | - | NZ_CP011546.1 | Corynebacterium uterequi |
| 46 | 2832071 | 2832262 | - | NZ_CP065682.1 | Brevibacterium casei |
| 47 | 2133551 | 2133742 | - | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 48 | 1771717 | 1771893 | - | NZ_CP015961.1 | Dietzia timorensis |
| 49 | 1214007 | 1214198 | + | NZ_CP012117.1 | Dermabacter vaginalis |
| 50 | 1231686 | 1231877 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 51 | 1727495 | 1727671 | - | NZ_CP015449.1 | Dietzia lutea |
| 52 | 807686 | 807886 | + | NZ_CP044548.2 | Janibacter melonis |
| 53 | 1960644 | 1960835 | - | NZ_CP026734.1 | Brevibacterium linens |
| 54 | 2407600 | 2407788 | + | NZ_CP023563.1 | Brachybacterium vulturis |
| 55 | 3367788 | 3367982 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 56 | 26913 | 27098 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 57 | 1826828 | 1827022 | + | NZ_CP048813.1 | Rhodococcus triatomae |
| 58 | 3249731 | 3249925 | - | NZ_AP023172.1 | Rhodococcus qingshengii |
| 59 | 1943618 | 1943806 | + | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 60 | 1535346 | 1535537 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 61 | 2657522 | 2657716 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 62 | 4028184 | 4028378 | + | NZ_AP017900.1 | Nocardia seriolae |
| 63 | 2426057 | 2426251 | + | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 64 | 4712812 | 4713006 | - | NZ_LR134352.1 | Nocardia asteroides |
| 65 | 2573589 | 2573783 | + | NZ_CP018082.1 | Nocardia mangyaensis |
| 66 | 4226807 | 4227001 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 67 | 2646691 | 2646870 | - | NZ_CP014228.1 | Actinomyces radicidentis |
| 68 | 3353109 | 3353303 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 69 | 2909182 | 2909364 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 70 | 5425820 | 5426014 | - | NC_022116.1 | Amycolatopsis mediterranei RB |
| 71 | 1462509 | 1462697 | - | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 72 | 956277 | 956462 | - | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP010827.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF14801.8 | 0.76 | 55 | 3314 | same-strand | tRNA methyltransferase complex GCD14 subunit N-term |
| 2 | PF00004.31 | 0.82 | 59 | 1626 | same-strand | ATPase family associated with various cellular activities (AAA) |
| 3 | PF17758.3 | 0.82 | 59 | 1626 | same-strand | Proteasomal ATPase OB N-terminal domain |
| 4 | PF16450.7 | 0.82 | 59 | 1626 | same-strand | Proteasomal ATPase OB C-terminal domain |
| 5 | PF03136.17 | 1.0 | 72 | 29.0 | same-strand | Pup-ligase protein |
| 6 | PF13280.8 | 0.75 | 54 | 1899.5 | same-strand | WYL domain |
| 7 | PF19187.2 | 0.67 | 48 | 2401.0 | same-strand | PafC helix-turn-helix domain |
| 8 | PF02416.18 | 0.67 | 48 | 3483.5 | same-strand | mttA/Hcf106 family |
| 9 | PF00902.20 | 0.67 | 48 | 3864.5 | same-strand | Sec-independent protein translocase protein (TatC) |
| 10 | PF13649.8 | 0.65 | 47 | 3348.5 | same-strand | Methyltransferase domain |
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