Result : C3PFU9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (Asp/Glu-ADT subunit C) (EC 6.3.5.-) |
| NCBI Accession ID | CP001601.1 |
| Organism | Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) (Corynebacterium nigricans) |
| Left | 1230375 |
| Right | 1230677 |
| Strand | + |
| Nucleotide Sequence | GTGTCTGATATTTCGCGTGACGAGGTCGCGCACTTGGCAAAGCTGTCGCGATTGGCCCTGAGCGAGGAAGAACTGAAACAGTTCGCCGCGCAGATCGACGAAATCGTGGACTCCGTGTCCGCGGTTGGCAAGGTCGAGGCTGAAGGTGTGGAGCCGATGTCGCACCCGCACTCCGTACATGCCCCAATGCGTGAGGACGTTGTCGTGCGAACCCTCACTGCCGAGCAGGCCTTGGACCAGGCCCCCGCAGCTGATGACGATCGCTTCATGGTTCCGCAGATTCTGGGTGGAGGAGACGAATAA |
| Sequence | MSDISRDEVAHLAKLSRLALSEEELKQFAAQIDEIVDSVSAVGKVEAEGVEPMSHPHSVHAPMREDVVVRTLTAEQALDQAPAADDDRFMVPQILGGGDE |
| Source of smORF | Swiss-Prot |
| Function | Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_00122}. |
| Pubmed ID | 20137072 |
| Domain | CDD:412411 |
| Functional Category | Others |
| Uniprot ID | C3PFU9 |
| ORF Length (Amino Acid) | 100 |
++ More..
| Conservation Analysis |
No. of Species: 295
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1230375 | 1230677 | + | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 2 | 1522205 | 1522507 | - | NZ_LS483460.1 | Corynebacterium minutissimum |
| 3 | 1273999 | 1274301 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 4 | 391935 | 392237 | - | NZ_CP014635.1 | Corynebacterium simulans |
| 5 | 1591389 | 1591685 | - | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 6 | 1072099 | 1072395 | + | NZ_CP011311.1 | Corynebacterium camporealensis |
| 7 | 1078144 | 1078440 | + | NZ_CP039247.1 | Corynebacterium endometrii |
| 8 | 1656243 | 1656539 | - | NZ_CP009251.1 | Corynebacterium stationis |
| 9 | 1734843 | 1735139 | - | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 10 | 1644710 | 1645006 | - | NZ_CP009249.1 | Corynebacterium phocae |
| 11 | 1126535 | 1126834 | + | NZ_CP011545.1 | Corynebacterium testudinoris |
| 12 | 1131141 | 1131437 | + | NZ_CP009246.1 | Corynebacterium flavescens |
| 13 | 1409990 | 1410289 | + | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 14 | 1226189 | 1226488 | + | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 15 | 1076517 | 1076813 | + | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 16 | 1239034 | 1239291 | + | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 17 | 1219623 | 1219922 | + | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 18 | 1259741 | 1260016 | + | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 19 | 781628 | 781927 | + | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 20 | 1460586 | 1460885 | + | NZ_AP017369.1 | Corynebacterium suranareeae |
| 21 | 1374582 | 1374857 | + | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 22 | 1230039 | 1230335 | + | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 23 | 1293065 | 1293310 | + | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 24 | 21073 | 21315 | + | NZ_LT906443.1 | Corynebacterium ulcerans |
| 25 | 1441441 | 1441686 | - | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 26 | 925580 | 925822 | + | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 27 | 1020091 | 1020333 | + | NZ_LR738855.1 | Corynebacterium rouxii |
| 28 | 986466 | 986708 | + | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 29 | 966470 | 966745 | + | NZ_CP011546.1 | Corynebacterium uterequi |
| 30 | 1376817 | 1377068 | + | NZ_CP011542.1 | Corynebacterium mustelae |
| 31 | 1091874 | 1092134 | + | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 32 | 2131486 | 2131785 | - | NZ_CP038157.1 | Corynebacterium sanguinis |
| 33 | 1681056 | 1681361 | - | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 34 | 1406981 | 1407247 | - | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 35 | 1406596 | 1406862 | - | NZ_CP035299.1 | Corynebacterium pelargi |
| 36 | 1380477 | 1380776 | - | NZ_LT906473.1 | Corynebacterium cystitidis |
| 37 | 849097 | 849354 | + | NZ_CP011312.1 | Corynebacterium kutscheri |
| 38 | 2265872 | 2266162 | + | NZ_CP068161.1 | Corynebacterium propinquum |
| 39 | 986332 | 986580 | + | NZ_CP033897.1 | Corynebacterium gerontici |
| 40 | 1107802 | 1108101 | + | NZ_CP019688.1 | Corynebacterium glaucum |
| 41 | 1208976 | 1209278 | + | NZ_CP033896.1 | Corynebacterium choanae |
| 42 | 1813987 | 1814280 | + | NZ_LS483464.1 | Corynebacterium renale |
| 43 | 971073 | 971372 | + | NZ_CP026948.1 | Corynebacterium liangguodongii |
| 44 | 1529446 | 1529742 | - | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 45 | 1089787 | 1090029 | - | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 46 | 215480 | 215731 | + | NZ_CP068168.1 | Corynebacterium amycolatum |
| 47 | 1007270 | 1007569 | + | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 48 | 1359167 | 1359430 | - | NZ_CP008944.1 | Corynebacterium atypicum |
| 49 | 1267061 | 1267360 | + | NZ_CP015622.1 | Corynebacterium crudilactis |
| 50 | 1174525 | 1174827 | + | NZ_LT906467.1 | Corynebacterium imitans |
| 51 | 1031487 | 1031786 | - | NZ_CP032788.1 | Corynebacterium xerosis |
| 52 | 1493131 | 1493424 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 53 | 1068643 | 1068894 | + | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 54 | 186166 | 186471 | + | NZ_LT906481.1 | Corynebacterium urealyticum |
| 55 | 1169297 | 1169602 | + | NZ_LS483459.1 | Corynebacterium jeikeium |
| 56 | 974698 | 974997 | + | NZ_CP009248.1 | Corynebacterium sphenisci DSM 44792 |
| 57 | 1404821 | 1405126 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 58 | 198141 | 198446 | + | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 59 | 1448329 | 1448634 | + | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 60 | 3417058 | 3417315 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 61 | 3758874 | 3759131 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 62 | 2455296 | 2455595 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 63 | 1701960 | 1702265 | - | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 64 | 3562445 | 3562744 | - | NZ_CP027793.1 | Rhodococcus hoagii |
| 65 | 2050431 | 2050730 | - | NZ_CP015449.1 | Dietzia lutea |
| 66 | 1872638 | 1872937 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 67 | 2133075 | 2133374 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 68 | 2570631 | 2570930 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 69 | 6920994 | 6921293 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 70 | 4383603 | 4383902 | + | NZ_LS483468.1 | Rhodococcus coprophilus |
| 71 | 2519689 | 2519988 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 72 | 3431366 | 3431689 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 73 | 4339808 | 4340104 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 74 | 3807988 | 3808287 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 75 | 8407161 | 8407460 | - | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 76 | 4634104 | 4634400 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 77 | 4976774 | 4977070 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 78 | 7039732 | 7040031 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 79 | 1793407 | 1793706 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 80 | 1635361 | 1635660 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 81 | 1226853 | 1227107 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 82 | 1213646 | 1213951 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 83 | 5017977 | 5018225 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 84 | 3311673 | 3311972 | - | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 85 | 5849862 | 5850158 | - | NZ_LR134352.1 | Nocardia asteroides |
| 86 | 3229941 | 3230198 | - | NZ_CP029146.1 | Rhodococcus ruber |
| 87 | 2900223 | 2900522 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 88 | 1285026 | 1285325 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 89 | 2867491 | 2867787 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 90 | 2030631 | 2030930 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 91 | 8747016 | 8747315 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 92 | 107772 | 108077 | + | NZ_CP045309.1 | Micromonospora terminaliae |
| 93 | 10177578 | 10177820 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 94 | 4908776 | 4909033 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 95 | 1505848 | 1506147 | + | NZ_CP022752.1 | Actinopolyspora erythraea |
| 96 | 5288376 | 5288672 | + | NZ_CP029043.1 | Streptomyces nigra |
| 97 | 2643732 | 2644028 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 98 | 4413099 | 4413398 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 99 | 5675037 | 5675333 | + | NC_016109.1 | Kitasatospora setae KM-6054 |
| 100 | 4089481 | 4089780 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 101 | 2118820 | 2119116 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 102 | 2806839 | 2807135 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 103 | 1963074 | 1963370 | - | NZ_CP048882.1 | Streptomyces bathyalis |
| 104 | 1736539 | 1736844 | + | NZ_CP058322.1 | Micromonospora carbonacea |
| 105 | 5571494 | 5571790 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 106 | 1593343 | 1593639 | - | NC_020990.1 | Streptomyces albidoflavus |
| 107 | 7516298 | 7516594 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 108 | 1626361 | 1626657 | + | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 109 | 1968502 | 1968798 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 110 | 3058660 | 3058956 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 111 | 7077238 | 7077534 | + | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 112 | 3537240 | 3537539 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 113 | 1328990 | 1329286 | - | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 114 | 4605959 | 4606258 | + | NZ_CP009922.3 | Streptomyces xiamenensis |
| 115 | 1515649 | 1515945 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 116 | 6687226 | 6687522 | + | NZ_CP070326.1 | Streptomyces noursei |
| 117 | 7993887 | 7994186 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 118 | 5351258 | 5351554 | + | NZ_AP023439.1 | Streptomyces tuirus |
| 119 | 4702219 | 4702518 | + | NZ_CP054938.1 | Streptomyces harbinensis |
| 120 | 5116571 | 5116867 | + | NZ_CP015866.1 | Streptomyces parvulus |
| 121 | 1893625 | 1893948 | + | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 122 | 2149760 | 2150014 | + | NZ_AP023396.1 | Nocardia wallacei |
| 123 | 5760071 | 5760367 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 124 | 976826 | 977125 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 125 | 1297373 | 1297678 | + | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 126 | 6273809 | 6274105 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 127 | 6299736 | 6300032 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 128 | 3171862 | 3172158 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 129 | 3354254 | 3354550 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 130 | 6645552 | 6645848 | + | NZ_CP023690.1 | Streptomyces spectabilis |
| 131 | 7551195 | 7551491 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 132 | 7271588 | 7271884 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 133 | 2978329 | 2978625 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 134 | 4280374 | 4280673 | + | NZ_CP016793.1 | Lentzea guizhouensis |
| 135 | 2367216 | 2367515 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 136 | 6026470 | 6026766 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 137 | 406659 | 406955 | - | NZ_CP022316.1 | Brachybacterium avium |
| 138 | 5933833 | 5934129 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 139 | 3103197 | 3103493 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 140 | 5956144 | 5956440 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 141 | 1627553 | 1627852 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 142 | 2049494 | 2049790 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 143 | 6164172 | 6164468 | + | NZ_CP023407.1 | Streptomyces fungicidicus |
| 144 | 2897471 | 2897767 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 145 | 3126285 | 3126581 | - | NZ_CP045643.1 | Streptomyces fagopyri |
| 146 | 730697 | 730996 | + | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 147 | 3161563 | 3161859 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 148 | 2804508 | 2804804 | - | NZ_CP034687.1 | Streptomyces griseoviridis |
| 149 | 2082333 | 2082629 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 150 | 5609552 | 5609848 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 151 | 2364181 | 2364477 | - | NZ_CP022310.1 | Streptomyces calvus |
| 152 | 5430024 | 5430320 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 153 | 2404525 | 2404821 | - | NZ_CP023701.1 | Streptomyces subrutilus |
| 154 | 5457589 | 5457888 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 155 | 1753118 | 1753414 | - | NZ_CP065253.1 | Streptomyces clavuligerus |
| 156 | 5393792 | 5394091 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 157 | 6527607 | 6527903 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 158 | 6153612 | 6153854 | - | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 159 | 6141977 | 6142273 | + | NZ_CP023691.1 | Streptomyces platensis |
| 160 | 6538776 | 6539072 | + | NZ_CP022685.1 | Streptomyces formicae |
| 161 | 1838859 | 1839155 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 162 | 9628468 | 9628767 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 163 | 5894495 | 5894791 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 164 | 6521471 | 6521767 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 165 | 1663642 | 1663941 | - | NZ_AP022603.1 | Mycolicibacterium fallax |
| 166 | 2302082 | 2302378 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 167 | 2111053 | 2111349 | + | NZ_CP023563.1 | Brachybacterium vulturis |
| 168 | 8072611 | 8072910 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 169 | 5641734 | 5642030 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 170 | 6375047 | 6375343 | + | NZ_CP027306.1 | Streptomyces atratus |
| 171 | 6104947 | 6105243 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 172 | 8042580 | 8042876 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 173 | 2618161 | 2618457 | - | NZ_CP026652.1 | Streptomyces dengpaensis |
| 174 | 4647675 | 4647971 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 175 | 3994250 | 3994546 | - | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 176 | 4751224 | 4751520 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 177 | 3372343 | 3372639 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 178 | 5289512 | 5289808 | + | NZ_CP021080.1 | Streptomyces pluripotens |
| 179 | 4970446 | 4970745 | + | NZ_CP041146.1 | Nocardioides humi |
| 180 | 7734509 | 7734808 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 181 | 5595362 | 5595658 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 182 | 5663635 | 5663958 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 183 | 2670230 | 2670502 | - | NZ_CP026734.1 | Brevibacterium linens |
| 184 | 2127760 | 2128056 | - | NZ_CP015961.1 | Dietzia timorensis |
| 185 | 2496041 | 2496298 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 186 | 5574286 | 5574582 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 187 | 5969502 | 5969798 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 188 | 6175250 | 6175546 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 189 | 5213020 | 5213316 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 190 | 4409203 | 4409502 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 191 | 2307021 | 2307317 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 192 | 1375414 | 1375719 | + | NC_009380.1 | Salinispora tropica CNB-440 |
| 193 | 5345619 | 5345915 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 194 | 4865738 | 4866034 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 195 | 5753024 | 5753320 | + | NZ_CP031194.1 | Streptomyces paludis |
| 196 | 2654609 | 2654857 | + | NZ_CP059694.1 | Gordonia rubripertincta |
| 197 | 4699297 | 4699593 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 198 | 4885716 | 4886012 | + | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 199 | 3057549 | 3057845 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 200 | 5654741 | 5654983 | - | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 201 | 4988188 | 4988487 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 202 | 8998022 | 8998321 | + | NZ_AP022870.1 | Phytohabitans flavus |
| 203 | 4632758 | 4633054 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 204 | 3716310 | 3716609 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 205 | 5829268 | 5829564 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 206 | 5505333 | 5505629 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 207 | 2655163 | 2655459 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 208 | 5926199 | 5926513 | + | NZ_CP033972.1 | Gordonia insulae |
| 209 | 1324101 | 1324397 | + | NZ_CP030862.1 | Streptomyces globosus |
| 210 | 3933835 | 3934134 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 211 | 949244 | 949540 | + | NZ_CP013290.1 | Janibacter indicus |
| 212 | 2172240 | 2172536 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 213 | 1629800 | 1630096 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 214 | 2684563 | 2684859 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 215 | 713157 | 713453 | + | NZ_CP040887.1 | Serinicoccus chungangensis |
| 216 | 703627 | 703923 | + | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 217 | 313143 | 313442 | - | NZ_CP038436.1 | Nocardioides seonyuensis |
| 218 | 2389479 | 2389775 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 219 | 5923988 | 5924284 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 220 | 4413045 | 4413341 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 221 | 1378594 | 1378836 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 222 | 5573015 | 5573311 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 223 | 3371431 | 3371730 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 224 | 3431264 | 3431563 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 225 | 3159413 | 3159712 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 226 | 6948104 | 6948403 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 227 | 5937449 | 5937745 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 228 | 7246617 | 7246916 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 229 | 3474705 | 3475016 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 230 | 5131747 | 5132046 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 231 | 5739246 | 5739542 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 232 | 5077499 | 5077798 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 233 | 5867681 | 5867977 | + | NZ_CP070242.1 | Streptomyces californicus |
| 234 | 2020715 | 2021011 | - | NZ_CP012507.1 | Kocuria palustris |
| 235 | 3531922 | 3532179 | + | NZ_AP022562.1 | Mycobacterium novum |
| 236 | 2916852 | 2917109 | - | NC_015576.1 | Mycolicibacter sinensis |
| 237 | 7087156 | 7087455 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 238 | 2870389 | 2870685 | - | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 239 | 2609857 | 2610156 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 240 | 2997842 | 2998144 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 241 | 825194 | 825490 | + | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 242 | 2427411 | 2427710 | + | NZ_AP023355.1 | Actinocatenispora thailandica |
| 243 | 2858551 | 2858850 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 244 | 6255960 | 6256256 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 245 | 5293178 | 5293474 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 246 | 3287400 | 3287657 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 247 | 2255918 | 2256217 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 248 | 9347577 | 9347876 | - | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 249 | 2166111 | 2166353 | + | NZ_AP017900.1 | Nocardia seriolae |
| 250 | 410917 | 411216 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 251 | 1933829 | 1934128 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 252 | 5164116 | 5164415 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 253 | 2176257 | 2176556 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 254 | 3362951 | 3363250 | + | NZ_CP060713.1 | Nocardioides mesophilus |
| 255 | 8895713 | 8896012 | - | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 256 | 2558324 | 2558623 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 257 | 2065340 | 2065639 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 258 | 918181 | 918480 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 259 | 610419 | 610718 | + | NZ_CP026923.1 | Pontimonas salivibrio |
| 260 | 3114906 | 3115217 | - | NZ_CP027433.1 | Gordonia iterans |
| 261 | 441526 | 441801 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 262 | 3336719 | 3337015 | - | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 263 | 5252750 | 5252992 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 264 | 7842150 | 7842449 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 265 | 4023633 | 4023932 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 266 | 5610030 | 5610329 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 267 | 2202695 | 2202994 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 268 | 2118925 | 2119224 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 269 | 3918019 | 3918318 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 270 | 4035545 | 4035844 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 271 | 4847994 | 4848293 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 272 | 1611618 | 1611911 | + | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 273 | 1383027 | 1383326 | + | NZ_CP016353.1 | Prauserella marina |
| 274 | 3765289 | 3765600 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 275 | 2987901 | 2988197 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 276 | 2513983 | 2514282 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 277 | 5933416 | 5933715 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 278 | 3251048 | 3251347 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 279 | 4535835 | 4536134 | - | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 280 | 3400068 | 3400367 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 281 | 5380377 | 5380676 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 282 | 1697701 | 1698000 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 283 | 3674869 | 3675165 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 284 | 311864 | 312109 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 285 | 2287779 | 2288078 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 286 | 5741756 | 5742055 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 287 | 1483690 | 1483989 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 288 | 378010 | 378309 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 289 | 1800371 | 1800670 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 290 | 85611 | 85910 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 291 | 2525914 | 2526213 | + | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 292 | 4480082 | 4480381 | + | NZ_AP022596.1 | Mycolicibacterium helvum |
| 293 | 569472 | 569771 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 294 | 368236 | 368535 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 295 | 1831210 | 1831509 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP068161.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01653.20 | 0.77 | 227 | 2531 | same-strand | NAD-dependent DNA ligase adenylation domain |
| 2 | PF03120.18 | 0.78 | 231 | 2551 | same-strand | NAD-dependent DNA ligase OB-fold domain |
| 3 | PF12826.9 | 0.77 | 228 | 2562.5 | same-strand | Helix-hairpin-helix motif |
| 4 | PF00533.28 | 0.78 | 231 | 2551 | same-strand | BRCA1 C Terminus (BRCT) domain |
| 5 | PF03119.18 | 0.78 | 231 | 2551 | same-strand | NAD-dependent DNA ligase C4 zinc finger domain |
| 6 | PF12738.9 | 0.67 | 199 | 2630 | same-strand | twin BRCT domain |
| 7 | PF01425.23 | 1.0 | 294 | 3.0 | same-strand | Amidase |
| 8 | PF14520.8 | 0.69 | 203 | 2643 | same-strand | Helix-hairpin-helix domain |
| 9 | PF02934.17 | 0.7 | 207 | 1758 | same-strand | GatB/GatE catalytic domain |
| 10 | PF02637.20 | 0.7 | 207 | 1758 | same-strand | GatB domain |
++ More..