Result : C3PFD4
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CP001601.1 |
| Organism | Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) (Corynebacterium nigricans) |
| Left | 1035825 |
| Right | 1036112 |
| Strand | - |
| Nucleotide Sequence | ATGACTGACACGATTGGCGCCGGCCAGCCCGGCCAGGACGCGTTCCCGCCGGTGGAAGAGCTGAGCTATGAGCAGGCTCGTGATGAGCTCATTGAAACAGTGAAAATCCTCGAGCTAGGACAGATGGGACTGGATGAATCCCTCAAGTACTGGGAGCGCGGCGAGGCCCTAGCTAAGGCCTGCGAGGCGCACCTCGACGGTGCCTCGAAGCGCGTAGAGGAGGCCCTCCGAAAGAACGCAGAGGGCACCGATAGTGCAGCACACAACGAAGAAGCAGGAGAAGACTAA |
| Sequence | MTDTIGAGQPGQDAFPPVEELSYEQARDELIETVKILELGQMGLDESLKYWERGEALAKACEAHLDGASKRVEEALRKNAEGTDSAAHNEEAGED |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | 20137072 |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | C3PFD4 |
| ORF Length (Amino Acid) | 95 |
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| Conservation Analysis |
No. of Species: 47
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1035825 | 1036112 | - | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 2 | 1070020 | 1070274 | - | NZ_CP010827.1 | Corynebacterium singulare |
| 3 | 1726603 | 1726887 | + | NZ_LS483460.1 | Corynebacterium minutissimum |
| 4 | 576944 | 577240 | + | NZ_CP014635.1 | Corynebacterium simulans |
| 5 | 1763255 | 1763524 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 6 | 1872699 | 1872947 | + | NZ_CP009251.1 | Corynebacterium stationis |
| 7 | 1940533 | 1940859 | + | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 8 | 1801003 | 1801281 | + | NZ_CP009249.1 | Corynebacterium phocae |
| 9 | 991165 | 991410 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 10 | 893094 | 893342 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 11 | 954861 | 955121 | - | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 12 | 1672412 | 1672699 | - | NZ_LS483464.1 | Corynebacterium renale |
| 13 | 1613338 | 1613619 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 14 | 983164 | 983430 | - | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 15 | 2151622 | 2151909 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 16 | 1020337 | 1020600 | - | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 17 | 1016627 | 1016872 | - | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 18 | 1224896 | 1225141 | - | NZ_AP017369.1 | Corynebacterium suranareeae |
| 19 | 873387 | 873644 | - | NZ_LR738855.1 | Corynebacterium rouxii |
| 20 | 833136 | 833393 | - | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 21 | 809801 | 810040 | - | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 22 | 1920608 | 1920844 | + | NZ_CP009248.1 | Corynebacterium sphenisci DSM 44792 |
| 23 | 884641 | 884916 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 24 | 2345367 | 2345630 | + | NZ_CP038157.1 | Corynebacterium sanguinis |
| 25 | 2327929 | 2328207 | - | NZ_LT906443.1 | Corynebacterium ulcerans |
| 26 | 782890 | 783174 | - | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 27 | 829035 | 829295 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 28 | 820891 | 821151 | - | NZ_CP011546.1 | Corynebacterium uterequi |
| 29 | 1316046 | 1316330 | - | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 30 | 1564748 | 1565008 | + | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 31 | 692303 | 692638 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 32 | 1565554 | 1565814 | + | NZ_CP035299.1 | Corynebacterium pelargi |
| 33 | 1083071 | 1083361 | + | NZ_CP068168.1 | Corynebacterium amycolatum |
| 34 | 1979627 | 1979905 | + | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 35 | 1712398 | 1712661 | + | NZ_CP011312.1 | Corynebacterium kutscheri |
| 36 | 30176 | 30466 | - | NZ_CP032788.1 | Corynebacterium xerosis |
| 37 | 3477049 | 3477327 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 38 | 1797955 | 1798212 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 39 | 3401090 | 3401323 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 40 | 6581578 | 6581823 | + | NZ_LR134352.1 | Nocardia asteroides |
| 41 | 1295549 | 1295782 | - | NZ_CP011853.1 | Gordonia phthalatica |
| 42 | 4065370 | 4065612 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 43 | 1497016 | 1497255 | - | NZ_CP026734.1 | Brevibacterium linens |
| 44 | 2581282 | 2581518 | + | NZ_CP049933.1 | Leucobacter coleopterorum |
| 45 | 1967891 | 1968148 | - | NZ_CP035491.1 | Agromyces protaetiae |
| 46 | 1644359 | 1644616 | - | NZ_CP013979.1 | Agromyces aureus |
| 47 | 5273861 | 5274175 | + | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_012590.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00206.22 | 0.79 | 37 | 2169 | same-strand | Lyase |
| 2 | PF10415.11 | 0.81 | 38 | 2169.5 | same-strand | Fumarase C C-terminus |
| 3 | PF03320.15 | 0.81 | 38 | 880.0 | same-strand | Bacterial fructose-1,6-bisphosphatase, glpX-encoded |
| 4 | PF14030.8 | 0.89 | 42 | 13.0 | opposite-strand | Protein of unknown function (DUF4245) |
| 5 | PF13742.8 | 1.0 | 47 | 40 | same-strand | OB-fold nucleic acid binding domain |
| 6 | PF01336.27 | 0.85 | 40 | 39.0 | same-strand | OB-fold nucleic acid binding domain |
| 7 | PF02401.20 | 0.89 | 42 | 1406.0 | opposite-strand | LytB protein |
| 8 | PF01594.18 | 0.74 | 35 | 4062.5 | same-strand | AI-2E family transporter |
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