Result : C1P618
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YrbN |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 3307853 |
| Right | 3307933 |
| Strand | - |
| Nucleotide Sequence | ATGAAAATTGCTGATCAATTTCATGATGAGTTATGTAGACTGGCCGCCATTAATTTTGAGGCACACGTACTACATGGCTGA |
| Sequence | MKIADQFHDELCRLAAINFEAHVLHG |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of NF033440. Profile Description: protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli. |
| Pubmed ID | 9278503 16738553 19121005 |
| Domain | CDD:380282 |
| Functional Category | Others |
| Uniprot ID | C1P618 |
| ORF Length (Amino Acid) | 26 |
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| Conservation Analysis |
No. of Species: 110
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4050478 | 4050558 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 5322170 | 5322250 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 3 | 4928276 | 4928356 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 4 | 1796229 | 1796309 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 5 | 2111679 | 2111759 | - | NZ_CP033744.1 | Citrobacter freundii |
| 6 | 2969710 | 2969790 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 7 | 3448074 | 3448154 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 8 | 3967697 | 3967777 | + | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 4213049 | 4213129 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 3293333 | 3293413 | - | NZ_AP014857.1 | Escherichia albertii |
| 11 | 3307853 | 3307933 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 12 | 3300059 | 3300139 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 13 | 2232845 | 2232925 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 14 | 1303639 | 1303719 | - | NZ_CP053416.1 | Salmonella bongori |
| 15 | 3814044 | 3814124 | - | NZ_LR134340.1 | Escherichia marmotae |
| 16 | 509474 | 509554 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 17 | 640655 | 640735 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 18 | 584858 | 584938 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 19 | 434074 | 434154 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 20 | 5276761 | 5276841 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 21 | 1114076 | 1114156 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 22 | 679273 | 679353 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 23 | 566793 | 566873 | + | NZ_CP054254.1 | Klebsiella variicola |
| 24 | 4726868 | 4726948 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 25 | 553081 | 553161 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 26 | 549320 | 549400 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 27 | 4048510 | 4048590 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 28 | 559812 | 559892 | + | NZ_CP050508.1 | Raoultella terrigena |
| 29 | 592014 | 592094 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 30 | 1131396 | 1131476 | - | NZ_CP026047.1 | Raoultella planticola |
| 31 | 539291 | 539371 | + | NZ_CP041247.1 | Raoultella electrica |
| 32 | 2847763 | 2847843 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 33 | 488088 | 488168 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 34 | 3550918 | 3550998 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 35 | 491170 | 491250 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 36 | 475991 | 476071 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 37 | 3675636 | 3675716 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 38 | 2951201 | 2951281 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 39 | 595394 | 595474 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 40 | 1115220 | 1115300 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 41 | 4112403 | 4112483 | - | NC_015968.1 | Enterobacter soli |
| 42 | 4206334 | 4206414 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 43 | 1880368 | 1880448 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 44 | 4251297 | 4251377 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 45 | 301180 | 301257 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 46 | 358515 | 358592 | + | NZ_CP023525.1 | Cedecea neteri |
| 47 | 585014 | 585094 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 48 | 4485364 | 4485444 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 49 | 4256895 | 4256975 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 50 | 3160035 | 3160115 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 51 | 4145342 | 4145422 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 52 | 4131433 | 4131513 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 53 | 4056395 | 4056475 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 54 | 4750022 | 4750102 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 55 | 574141 | 574221 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 56 | 3680201 | 3680281 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 57 | 527878 | 527955 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 58 | 525362 | 525439 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 59 | 533280 | 533360 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 60 | 4314444 | 4314524 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 61 | 2567097 | 2567177 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 62 | 361750 | 361827 | + | NZ_LR134201.1 | Cedecea lapagei |
| 63 | 3560761 | 3560841 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 64 | 412043 | 412123 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 65 | 4045788 | 4045868 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 66 | 3361853 | 3361933 | + | NZ_CP049115.1 | Pantoea stewartii |
| 67 | 2546797 | 2546874 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 68 | 3284102 | 3284179 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 69 | 669205 | 669282 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 70 | 4196292 | 4196369 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 71 | 4549062 | 4549139 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 72 | 711163 | 711240 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 73 | 4094947 | 4095024 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 74 | 902430 | 902507 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 75 | 761876 | 761953 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 76 | 2010906 | 2010986 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 77 | 1968497 | 1968577 | + | NZ_CP065640.1 | Serratia rubidaea |
| 78 | 507340 | 507417 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 79 | 2388243 | 2388323 | + | NZ_CP011254.1 | Serratia fonticola |
| 80 | 221442 | 221522 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 81 | 484074 | 484154 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 82 | 423621 | 423701 | + | NZ_LR134494.1 | Serratia quinivorans |
| 83 | 422899 | 422979 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 84 | 433116 | 433196 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 85 | 565519 | 565599 | + | NZ_LT906479.1 | Serratia ficaria |
| 86 | 4903801 | 4903881 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 87 | 4602866 | 4602946 | - | NZ_CP071320.1 | Serratia ureilytica |
| 88 | 4148571 | 4148651 | - | NZ_CP046293.1 | Yersinia intermedia |
| 89 | 2216478 | 2216558 | + | NZ_CP007230.1 | Yersinia similis |
| 90 | 4175393 | 4175473 | + | NZ_CP067057.1 | Rahnella aceris |
| 91 | 514734 | 514814 | + | NZ_CP032487.1 | Yersinia hibernica |
| 92 | 4161351 | 4161431 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 93 | 577546 | 577626 | + | NZ_CP043727.1 | Yersinia canariae |
| 94 | 4003582 | 4003662 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 95 | 1812423 | 1812503 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 96 | 3224614 | 3224694 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 97 | 3410877 | 3410957 | + | NZ_CP009787.1 | Yersinia rohdei |
| 98 | 2665699 | 2665779 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 99 | 3513329 | 3513406 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 100 | 3984913 | 3984987 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 101 | 1701589 | 1701663 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 102 | 3195663 | 3195737 | - | NZ_CP065534.1 | Lonsdalea populi |
| 103 | 575453 | 575527 | + | NZ_CP050150.1 | Hafnia alvei |
| 104 | 2190039 | 2190116 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 105 | 473626 | 473703 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 106 | 5283302 | 5283382 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 107 | 3286836 | 3286916 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 108 | 489379 | 489456 | + | NZ_LR134531.1 | Pragia fontium |
| 109 | 1258271 | 1258351 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 110 | 2403880 | 2403960 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 111 | 4686728 | 4686808 | - | NC_012962.1 | Photorhabdus asymbiotica |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014857.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01136.21 | 0.65 | 72 | 5380 | opposite-strand | Peptidase family U32 |
| 2 | PF00296.22 | 0.65 | 72 | 3380 | opposite-strand | Luciferase-like monooxygenase |
| 3 | PF00270.31 | 1.0 | 110 | -7 | same-strand | DEAD/DEAH box helicase |
| 4 | PF00271.33 | 1.0 | 110 | -7 | same-strand | Helicase conserved C-terminal domain |
| 5 | PF03880.17 | 1.0 | 110 | -7 | same-strand | DbpA RNA binding domain |
| 6 | PF12343.10 | 0.74 | 81 | -7.0 | same-strand | DeaD helicase C-terminal disordered region |
| 7 | PF07719.19 | 0.98 | 108 | 107 | same-strand | Tetratricopeptide repeat |
| 8 | PF00515.30 | 1.0 | 110 | 107 | same-strand | Tetratricopeptide repeat |
| 9 | PF13414.8 | 0.64 | 70 | 107 | same-strand | TPR repeat |
| 10 | PF13432.8 | 0.86 | 95 | 107.0 | same-strand | Tetratricopeptide repeat |
| 11 | PF01138.23 | 1.0 | 110 | 1109 | same-strand | 3' exoribonuclease family, domain 1 |
| 12 | PF03726.16 | 1.0 | 110 | 1109 | same-strand | Polyribonucleotide nucleotidyltransferase, RNA binding domain |
| 13 | PF00575.25 | 1.0 | 110 | 1109 | same-strand | S1 RNA binding domain |
| 14 | PF03725.17 | 1.0 | 110 | 1109 | same-strand | 3' exoribonuclease family, domain 2 |
| 15 | PF00013.31 | 1.0 | 110 | 1109 | same-strand | KH domain |
| 16 | PF00312.24 | 1.0 | 110 | 3489 | same-strand | Ribosomal protein S15 |
| 17 | PF01509.20 | 0.98 | 108 | 3901 | same-strand | TruB family pseudouridylate synthase (N terminal domain) |
| 18 | PF16198.7 | 0.98 | 108 | 3901 | same-strand | tRNA pseudouridylate synthase B C-terminal domain |
| 19 | PF09157.13 | 0.98 | 108 | 3901 | same-strand | Pseudouridine synthase II TruB, C-terminal |
| 20 | PF02033.20 | 0.86 | 95 | 4846.0 | same-strand | Ribosome-binding factor A |
| 21 | PF13371.8 | 0.72 | 79 | 107 | same-strand | Tetratricopeptide repeat |
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