* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_013716.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00692.21
|
0.67
|
2
|
6454.0
|
same-strand
|
dUTPase
|
2
|
PF00485.20
|
0.67
|
2
|
5652.5
|
same-strand
|
Phosphoribulokinase / Uridine kinase family
|
3
|
PF13238.8
|
0.67
|
2
|
5652.5
|
same-strand
|
AAA domain
|
4
|
PF00990.23
|
0.67
|
2
|
2423.5
|
opposite-strand
|
Diguanylate cyclase, GGDEF domain
|
5
|
PF05231.16
|
0.67
|
2
|
2423.5
|
opposite-strand
|
MASE1
|
6
|
PF00563.22
|
0.67
|
2
|
2423.5
|
opposite-strand
|
EAL domain
|
7
|
PF00989.27
|
0.67
|
2
|
2423.5
|
opposite-strand
|
PAS fold
|
8
|
PF08448.12
|
0.67
|
2
|
2423.5
|
opposite-strand
|
PAS fold
|
9
|
PF13426.9
|
0.67
|
2
|
2423.5
|
opposite-strand
|
PAS domain
|
10
|
PF08447.14
|
0.67
|
2
|
2423.5
|
opposite-strand
|
PAS fold
|
11
|
PF06029.13
|
0.67
|
2
|
1586.5
|
same-strand
|
AlkA N-terminal domain
|
12
|
PF13533.8
|
0.67
|
2
|
262.0
|
opposite-strand
|
Biotin-lipoyl like
|
13
|
PF13437.8
|
0.67
|
2
|
262.0
|
opposite-strand
|
HlyD family secretion protein
|
14
|
PF16576.7
|
0.67
|
2
|
262.0
|
opposite-strand
|
Barrel-sandwich domain of CusB or HlyD membrane-fusion
|
15
|
PF00873.21
|
0.67
|
2
|
3081.0
|
opposite-strand
|
AcrB/AcrD/AcrF family
|
16
|
PF07690.18
|
0.67
|
2
|
7719.5
|
opposite-strand
|
Major Facilitator Superfamily
|
17
|
PF02518.28
|
0.67
|
2
|
9131.5
|
opposite-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
18
|
PF00672.27
|
0.67
|
2
|
9131.5
|
opposite-strand
|
HAMP domain
|
19
|
PF00512.27
|
0.67
|
2
|
9131.5
|
opposite-strand
|
His Kinase A (phospho-acceptor) domain
|
++ More..