Result : C1P610
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized membrane protein YpdK |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 2496921 |
| Right | 2496992 |
| Strand | + |
| Nucleotide Sequence | GTGAAATATTTCTTTATGGGCATTTCTTTTATGGTCATCGTTTGGGCCGGTACTTTTGCCCTGATGATCTAA |
| Sequence | MKYFFMGISFMVIVWAGTFALMI |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of NF033437. Profile Description: membrane protein YpdK. |
| Pubmed ID | 9278503 16738553 19121005 19734316 21778229 |
| Domain | CDD:380279 |
| Functional Category | Others |
| Uniprot ID | C1P610 |
| ORF Length (Amino Acid) | 23 |
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| Conservation Analysis |
No. of Species: 113
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3225188 | 3225259 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 2496921 | 2496992 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2499971 | 2500042 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 3043952 | 3044023 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 1233612 | 1233683 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 6 | 2063049 | 2063120 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 7 | 2952358 | 2952429 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 8 | 4717345 | 4717416 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 9 | 1188541 | 1188612 | + | NZ_CP033744.1 | Citrobacter freundii |
| 10 | 3907240 | 3907311 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 2515883 | 2515954 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 12 | 7643 | 7714 | - | NZ_CP038469.1 | Citrobacter tructae |
| 13 | 400405 | 400476 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 14 | 3261961 | 3262032 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 15 | 2471750 | 2471821 | + | NZ_AP014857.1 | Escherichia albertii |
| 16 | 4320642 | 4320713 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 17 | 484153 | 484224 | + | NZ_CP053416.1 | Salmonella bongori |
| 18 | 1465584 | 1465655 | - | NZ_CP050508.1 | Raoultella terrigena |
| 19 | 1416644 | 1416715 | - | NZ_CP054254.1 | Klebsiella variicola |
| 20 | 3838365 | 3838436 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 21 | 1406630 | 1406701 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 22 | 1588040 | 1588111 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 23 | 4613885 | 4613956 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 24 | 1678298 | 1678369 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 25 | 1591594 | 1591665 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 26 | 4812507 | 4812578 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 27 | 1373422 | 1373481 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 28 | 3578422 | 3578493 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 29 | 632979 | 633050 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 30 | 1963491 | 1963562 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 31 | 3389569 | 3389640 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 32 | 4580666 | 4580737 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 33 | 1348081 | 1348152 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 34 | 1427694 | 1427765 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 35 | 276204 | 276275 | + | NZ_CP026047.1 | Raoultella planticola |
| 36 | 1416162 | 1416233 | - | NZ_CP041247.1 | Raoultella electrica |
| 37 | 1247987 | 1248058 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 38 | 1336772 | 1336843 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 39 | 3652177 | 3652248 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 40 | 181518 | 181589 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 41 | 2618226 | 2618297 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 42 | 3445375 | 3445446 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 43 | 3926253 | 3926324 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 44 | 3334707 | 3334778 | + | NC_015968.1 | Enterobacter soli |
| 45 | 3364384 | 3364455 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 46 | 3329538 | 3329609 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 47 | 3329687 | 3329758 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 48 | 1076093 | 1076164 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 49 | 2084348 | 2084419 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 50 | 2987637 | 2987708 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 51 | 3175604 | 3175675 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 52 | 900799 | 900870 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 53 | 3103309 | 3103380 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 54 | 3039438 | 3039509 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 55 | 1077321 | 1077392 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 56 | 348758 | 348829 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 57 | 1106506 | 1106565 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 58 | 3252838 | 3252912 | + | NZ_CP032487.1 | Yersinia hibernica |
| 59 | 1395110 | 1395184 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 60 | 1445883 | 1445957 | - | NZ_CP043727.1 | Yersinia canariae |
| 61 | 1385550 | 1385624 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 62 | 1464669 | 1464743 | + | NZ_CP009787.1 | Yersinia rohdei |
| 63 | 1392000 | 1392059 | - | NZ_CP071320.1 | Serratia ureilytica |
| 64 | 1432208 | 1432267 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 65 | 3717570 | 3717629 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 66 | 3827871 | 3827945 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 67 | 4798593 | 4798652 | + | NZ_CP007230.1 | Yersinia similis |
| 68 | 3026785 | 3026844 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 69 | 4026900 | 4026959 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 70 | 5923104 | 5923163 | + | NZ_CP011254.1 | Serratia fonticola |
| 71 | 3281823 | 3281882 | + | NZ_CP046293.1 | Yersinia intermedia |
| 72 | 4274674 | 4274733 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 73 | 1251301 | 1251375 | - | NZ_CP023525.1 | Cedecea neteri |
| 74 | 271685 | 271744 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 75 | 2590415 | 2590474 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 76 | 2168473 | 2168532 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 77 | 3373384 | 3373443 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 78 | 1614113 | 1614172 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 79 | 3381993 | 3382052 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 80 | 1500042 | 1500101 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 81 | 3169936 | 3169995 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 82 | 3232215 | 3232274 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 83 | 3708255 | 3708329 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 84 | 3743908 | 3743967 | + | NZ_LT906479.1 | Serratia ficaria |
| 85 | 1225262 | 1225336 | - | NZ_LR134201.1 | Cedecea lapagei |
| 86 | 2666274 | 2666333 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 87 | 640121 | 640180 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 88 | 1158836 | 1158910 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 89 | 4990006 | 4990065 | + | NZ_CP065640.1 | Serratia rubidaea |
| 90 | 1286016 | 1286075 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 91 | 1253978 | 1254052 | - | NZ_LT615367.1 | Dickeya aquatica |
| 92 | 1530121 | 1530192 | + | NZ_CP049115.1 | Pantoea stewartii |
| 93 | 3261919 | 3261990 | + | NZ_CP026377.1 | Mixta gaviniae |
| 94 | 4868713 | 4868772 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 95 | 4341750 | 4341809 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 96 | 3387260 | 3387319 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 97 | 574373 | 574432 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 98 | 3396093 | 3396152 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 99 | 1485239 | 1485298 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 100 | 3189239 | 3189298 | + | NZ_CP025799.1 | Dickeya zeae |
| 101 | 1222588 | 1222647 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 102 | 1387551 | 1387622 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 103 | 3043568 | 3043639 | + | NZ_CP061511.1 | Mixta calida |
| 104 | 3776697 | 3776771 | + | NZ_LR134494.1 | Serratia quinivorans |
| 105 | 2408030 | 2408101 | + | NZ_CP028271.1 | Mixta intestinalis |
| 106 | 4287168 | 4287230 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 107 | 2811067 | 2811138 | - | NZ_CP019706.1 | Pantoea alhagi |
| 108 | 1437379 | 1437438 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 109 | 3600316 | 3600387 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 110 | 1751466 | 1751525 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 111 | 3770086 | 3770160 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 112 | 1160615 | 1160689 | - | NZ_CP038853.1 | Pantoea vagans |
| 113 | 2867860 | 2867934 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 114 | 1192073 | 1192147 | - | NZ_CP045720.1 | Pantoea eucalypti |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00155.23 | 0.82 | 93 | 65.0 | opposite-strand | Aminotransferase class I and II |
| 2 | PF07694.14 | 0.75 | 85 | 1692.5 | same-strand | 5TMR of 5TMR-LYT |
| 3 | PF06580.15 | 0.76 | 86 | 1693 | same-strand | Histidine kinase |
| 4 | PF02518.28 | 0.76 | 86 | 1693 | same-strand | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
| 5 | PF04397.17 | 0.65 | 73 | 3398.5 | same-strand | LytTr DNA-binding domain |
| 6 | PF00072.26 | 0.65 | 73 | 3397.5 | same-strand | Response regulator receiver domain |
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