Result : C1CP08
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-directed RNA polymerase subunit epsilon (RNAP epsilon subunit) (EC 2.7.7.6) (RNA polymerase epsilon subunit) (Transcriptase subunit epsilon) |
| NCBI Accession ID | CP000921.1 |
| Organism | Streptococcus pneumoniae (strain Taiwan19F-14) |
| Left | 153480 |
| Right | 153713 |
| Strand | - |
| Nucleotide Sequence | ATGATTTACAAAGTTTTTTATCAAGAAACAAAAGAACGTAGCCCACGCCGTGAAACAACACGCACGCTTTACCTAGACATCGATGCCAGCTCAGAACTTGAGGGCCGTATCACTGCTCGCCAACTTGTCGAAGAAAATCGCCCAGAGTACAATATCGAGTATATCGAACTCTTGTCTGACAAATTGCTCGATTACGAAAAAGAAACTGGCGCCTTCGAAATTACGGAGTTCTAA |
| Sequence | MIYKVFYQETKERSPRRETTRTLYLDIDASSELEGRITARQLVEENRPEYNIEYIELLSDKLLDYEKETGAFEITEF |
| Source of smORF | Swiss-Prot |
| Function | A non-essential component of RNA polymerase (RNAP). {ECO:0000255|HAMAP-Rule:MF_01553}. |
| Pubmed ID | 21034474 |
| Domain | CDD:416298 |
| Functional Category | Others |
| Uniprot ID | C1CP08 |
| ORF Length (Amino Acid) | 77 |
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| Conservation Analysis |
No. of Species: 73
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1912298 | 1912531 | - | NZ_CP032621.1 | Streptococcus gwangjuense |
| 2 | 209081 | 209314 | - | NC_015875.1 | Streptococcus pseudopneumoniae IS7493 |
| 3 | 1810208 | 1810441 | + | NZ_LR134336.1 | Streptococcus oralis ATCC 35037 |
| 4 | 1739376 | 1739606 | + | NZ_CP065061.1 | Streptococcus equi subsp. zooepidemicus |
| 5 | 254024 | 254254 | + | NZ_CP043405.1 | Streptococcus ratti |
| 6 | 1701679 | 1701909 | + | NC_017581.1 | Streptococcus thermophilus JIM 8232 |
| 7 | 1700306 | 1700536 | + | NZ_LR134512.1 | Streptococcus agalactiae |
| 8 | 822432 | 822662 | - | NZ_CP032620.1 | Streptococcus koreensis |
| 9 | 241554 | 241784 | - | NZ_LS483383.1 | Streptococcus cristatus ATCC 51100 |
| 10 | 1745392 | 1745622 | + | NZ_AP014612.1 | Streptococcus troglodytae |
| 11 | 1869428 | 1869658 | + | NZ_LR594046.1 | Streptococcus dysgalactiae |
| 12 | 1269155 | 1269385 | + | NZ_CP013237.1 | Streptococcus mutans |
| 13 | 847951 | 848181 | - | NZ_LR134293.1 | Streptococcus canis |
| 14 | 236799 | 237029 | - | NZ_LR594049.1 | Streptococcus gordonii |
| 15 | 1804567 | 1804797 | + | NZ_CP025536.1 | Streptococcus pluranimalium |
| 16 | 1730617 | 1730847 | + | NZ_LR134275.1 | Streptococcus vestibularis |
| 17 | 1492961 | 1493191 | + | NZ_CP010450.1 | Streptococcus pyogenes |
| 18 | 150333 | 150563 | - | NC_012924.1 | Streptococcus suis SC84 |
| 19 | 1463509 | 1463739 | - | NZ_LR134341.1 | Streptococcus pseudoporcinus |
| 20 | 527466 | 527696 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 21 | 169292 | 169522 | - | NZ_AP018400.1 | Streptococcus ruminantium |
| 22 | 1736824 | 1737054 | + | NZ_LR594050.1 | Streptococcus porcinus |
| 23 | 284937 | 285167 | - | NZ_CP029491.1 | Streptococcus sobrinus |
| 24 | 1555439 | 1555669 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 25 | 1918387 | 1918617 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 26 | 386048 | 386278 | + | NZ_CP016953.1 | Streptococcus himalayensis |
| 27 | 1873458 | 1873688 | - | NZ_CP014835.1 | Streptococcus halotolerans |
| 28 | 1719938 | 1720168 | + | NZ_CP012805.1 | Streptococcus anginosus |
| 29 | 1653799 | 1654029 | + | NZ_CP034543.1 | Streptococcus periodonticum |
| 30 | 191677 | 191907 | - | NZ_LS483436.1 | Streptococcus intermedius |
| 31 | 1854152 | 1854382 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 32 | 355404 | 355634 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 33 | 906301 | 906531 | - | NZ_CP015196.1 | Streptococcus marmotae |
| 34 | 562446 | 562676 | - | NZ_CP022680.1 | Streptococcus respiraculi |
| 35 | 1610072 | 1610302 | + | NZ_LS483343.1 | Streptococcus ferus |
| 36 | 2222594 | 2222824 | - | NZ_LT906439.1 | Streptococcus merionis |
| 37 | 479646 | 479876 | - | NZ_CP070872.1 | Lactococcus taiwanensis |
| 38 | 2451163 | 2451393 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 39 | 285383 | 285613 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 40 | 574352 | 574582 | - | NZ_CP065637.1 | Lactococcus garvieae |
| 41 | 230334 | 230546 | + | NZ_CP027783.1 | Tetragenococcus osmophilus |
| 42 | 689409 | 689621 | - | NZ_CP012047.1 | Tetragenococcus halophilus |
| 43 | 675376 | 675588 | - | NZ_LS483306.1 | Enterococcus cecorum |
| 44 | 795544 | 795759 | - | NZ_CP049886.1 | Vagococcus coleopterorum |
| 45 | 739371 | 739583 | - | NZ_CP047141.1 | Ligilactobacillus animalis |
| 46 | 577714 | 577926 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 47 | 1348096 | 1348308 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 48 | 1683763 | 1683975 | + | NZ_CP065993.1 | Leuconostoc pseudomesenteroides |
| 49 | 1504572 | 1504784 | - | NC_014136.1 | Leuconostoc kimchii IMSNU 11154 |
| 50 | 2035106 | 2035318 | + | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 51 | 2095969 | 2096181 | + | NZ_CP065211.1 | Enterococcus lactis |
| 52 | 3427834 | 3428046 | - | NZ_CP021874.1 | Enterococcus wangshanyuanii |
| 53 | 1587499 | 1587717 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 54 | 692749 | 692961 | - | NZ_AP022822.1 | Enterococcus saigonensis |
| 55 | 2191971 | 2192189 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 56 | 1301125 | 1301337 | - | NZ_CP023011.2 | Enterococcus hirae |
| 57 | 1987018 | 1987230 | + | NZ_CP023074.1 | Enterococcus thailandicus |
| 58 | 1588628 | 1588840 | + | NZ_CP015247.1 | Leuconostoc suionicum |
| 59 | 87083 | 87295 | - | NZ_CP028251.1 | Leuconostoc mesenteroides |
| 60 | 601325 | 601537 | + | NZ_CP042374.1 | Leuconostoc carnosum |
| 61 | 1245703 | 1245915 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 62 | 1252753 | 1252965 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 63 | 1200193 | 1200405 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 64 | 501166 | 501378 | - | NC_018631.1 | Leuconostoc gelidum JB7 |
| 65 | 846840 | 847064 | - | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 66 | 1181782 | 1181994 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 67 | 914543 | 914767 | - | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 68 | 718973 | 719197 | - | NZ_CP029476.1 | Lactobacillus apis |
| 69 | 865424 | 865663 | - | NZ_CP017326.1 | Weissella soli |
| 70 | 790812 | 791033 | + | NZ_CP031835.1 | Lactobacillus amylolyticus |
| 71 | 812831 | 813052 | - | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 72 | 498199 | 498414 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 73 | 360867 | 361082 | - | NZ_CP034726.1 | Acetilactobacillus jinshanensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP032621.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF17770.3 | 0.97 | 71 | 3 | same-strand | Ribonuclease J C-terminal domain |
| 2 | PF07521.14 | 0.74 | 54 | 3.5 | same-strand | Zn-dependent metallo-hydrolase RNA specificity domain |
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