ProsmORF-pred
Result : C1A4B1
Protein Information
Information Type Description
Protein name 30S ribosomal protein S21
NCBI Accession ID AP009153.1
Organism Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505)
Left 2213300
Right 2213488
Strand -
Nucleotide Sequence TTGTCGGAAGTCATCATCCACGAGGACGAGAATTTCGAGCGGGCACTCAAGCGCTTCAAGAAGAAGTGCGAGAAGGCCGGTATCCTGTCCGATCTGCGCAAGCACCGTCACTACGAGAAGCCGTCGGAGCGTCGCAAGCGCAAGATGAACGCCGCCGTTCGGAAGAATCGCCGCACCCGCCACGGGTGA
Sequence MSEVIIHEDENFERALKRFKKKCEKAGILSDLRKHRHYEKPSERRKRKMNAAVRKNRRTRHG
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00529. Profile Description: Ribosomal protein S21. 30S ribosomal protein S21; Reviewed
Pubmed ID
Domain CDD:412427
Functional Category Ribosomal_protein
Uniprot ID C1A4B1
ORF Length (Amino Acid) 62
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 196
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2213300 2213488 - NC_012489.1 Gemmatimonas aurantiaca T-27
2 2344844 2345032 - NZ_CP011454.1 Gemmatimonas phototrophica
3 1892832 1893014 - NC_018664.1 Gottschalkia acidurici 9a
4 2634901 2635083 - NZ_CP020559.1 Clostridium formicaceticum
5 453887 454069 - NZ_CP017269.1 Geosporobacter ferrireducens
6 1896673 1896870 + NZ_CP018099.1 Caldithrix abyssi DSM 13497
7 2448868 2449050 - NZ_CP009687.1 Clostridium aceticum
8 905608 905784 + NC_014377.1 Thermosediminibacter oceani DSM 16646
9 1708402 1708584 - NC_008593.1 Clostridium novyi NT
10 505399 505575 + NZ_CP047242.1 Trichormus variabilis 0441
11 396973 397149 - NZ_CP047242.1 Trichormus variabilis 0441
12 2383278 2383457 + NC_015275.1 Cellulosilyticum lentocellum DSM 5427
13 1964936 1965112 - NZ_CP016786.1 Clostridium isatidis
14 1310192 1310368 + NZ_CP040924.1 Clostridium thermarum
15 1903305 1903520 + NC_004556.1 Xylella fastidiosa Temecula1
16 2667540 2667716 - NZ_CP059066.1 Koleobacter methoxysyntrophicus
17 1778325 1778501 + NC_014393.1 Clostridium cellulovorans 743B
18 2062353 2062550 - NC_017094.1 Leptospirillum ferrooxidans C2-3
19 5609413 5609583 - NC_009925.1 Acaryochloris marina MBIC11017
20 2179055 2179270 + NZ_CP053627.1 Xylella taiwanensis
21 2145695 2145871 - NZ_CP021850.1 Pseudoclostridium thermosuccinogenes
22 1609542 1609718 - NZ_LR590481.1 Hathewaya histolytica
23 416659 416874 - NZ_CP046570.1 Xanthomonas albilineans
24 4154470 4154649 + NC_019751.1 Calothrix sp. PCC 6303
25 1537886 1538101 + NZ_CP043476.1 Xanthomonas hyacinthi
26 1761636 1761812 - NZ_LT906477.1 Clostridium cochlearium
27 2895862 2896041 - NZ_CP060822.1 Cylindrospermopsis curvispora GIHE-G1
28 511737 511913 - NZ_CP023671.1 Clostridium septicum
29 2475277 2475453 - NZ_CP013019.1 Clostridium pasteurianum
30 1145868 1146044 + NC_014657.1 Caldicellulosiruptor owensensis OL
31 1408795 1408971 - NC_014392.1 Caldicellulosiruptor obsidiansis OB47
32 716522 716698 + NC_015949.1 Caldicellulosiruptor lactoaceticus 6A
33 1489400 1489576 - NC_014652.1 Caldicellulosiruptor hydrothermalis 108
34 1304492 1304668 + NC_014721.1 Caldicellulosiruptor kristjanssonii I77R1B
35 1605531 1605707 - NC_014720.1 Caldicellulosiruptor kronotskyensis 2002
36 1462219 1462395 - NZ_CP034791.1 Caldicellulosiruptor changbaiensis
37 1359037 1359213 + NC_012034.1 Caldicellulosiruptor bescii DSM 6725
38 1977220 1977396 + NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903
39 1433968 1434144 + NC_015687.1 Clostridium acetobutylicum DSM 1731
40 394558 394737 - NZ_AP014638.1 Leptolyngbya boryana IAM M-101
41 52976 53164 + NZ_AP014638.1 Leptolyngbya boryana IAM M-101
42 2388962 2389138 - NZ_CP014170.1 Clostridium tyrobutyricum
43 910343 910519 + NC_011837.1 Clostridium kluyveri NBRC 12016
44 3140877 3141053 + NZ_CP012395.1 Clostridium autoethanogenum DSM 10061
45 891560 891736 + NC_014328.1 Clostridium ljungdahlii DSM 13528
46 488354 488530 + NZ_CP020953.1 Clostridium drakei
47 5259682 5259858 + NZ_CP011803.1 Clostridium carboxidivorans P7
48 3758754 3758930 - NZ_CP009933.1 Clostridium scatologenes
49 2529158 2529334 - NC_008261.1 Clostridium perfringens ATCC 13124
50 1513578 1513754 - NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532
51 2317242 2317418 - NZ_CP032416.1 Clostridium fermenticellae
52 985641 985817 + NZ_CP027286.1 Clostridium chauvoei
53 1414263 1414439 - NZ_CP045798.1 Thermoanaerosceptrum fracticalcis
54 683317 683496 + NZ_CP014150.1 Paeniclostridium sordellii
55 3940917 3941096 - NZ_CP031941.1 Nostoc sphaeroides
56 2379068 2379256 - NZ_CP031941.1 Nostoc sphaeroides
57 5549416 5549595 - NZ_CP054698.1 Nostoc edaphicum CCNP1411
58 475461 475649 + NZ_CP054698.1 Nostoc edaphicum CCNP1411
59 5407215 5407394 - NC_010628.1 Nostoc punctiforme PCC 73102
60 1135410 1135598 + NC_010628.1 Nostoc punctiforme PCC 73102
61 585225 585398 + NZ_CP029256.1 Christensenella minuta
62 2054960 2055121 - NC_015520.1 Mahella australiensis 50-1 BON
63 3590484 3590672 - NZ_CP024785.1 Nostoc flagelliforme CCNUN1
64 6080097 6080276 + NZ_CP024785.1 Nostoc flagelliforme CCNUN1
65 1216535 1216711 + NC_022571.1 Clostridium saccharobutylicum DSM 13864
66 764605 764784 - NZ_CP027228.1 Mogibacterium diversum
67 2930027 2930203 - NZ_CP030775.1 Clostridium butyricum
68 991318 991497 + NZ_LT906470.1 Veillonella rodentium
69 1059046 1059225 - NZ_AP022321.1 Veillonella nakazawae
70 1115491 1115670 - NZ_LR134375.1 Veillonella dispar
71 1159269 1159448 - NZ_LR778174.1 Veillonella parvula
72 2586090 2586266 - NZ_CP007032.1 Desulfitobacterium metallireducens DSM 15288
73 1627035 1627211 - NZ_HG917868.1 Clostridium bornimense
74 3663506 3663682 - NC_018017.1 Desulfitobacterium dehalogenans ATCC 51507
75 4543268 4543444 - NC_011830.1 Desulfitobacterium hafniense DCB-2
76 1927685 1927864 - NZ_CP036523.1 Peptacetobacter hiranonis
77 1342890 1343069 + NZ_CP019870.1 Clostridioides difficile
78 3298411 3298605 - NC_019729.1 Oscillatoria nigro-viridis PCC 7112
79 937600 937779 - NZ_LT635480.1 Ndongobacter massiliensis
80 341324 341503 + NZ_CP009761.1 Parvimonas micra
81 1137947 1138123 - NZ_LT635479.1 Lachnoclostridium phocaeense
82 608843 609019 - NZ_LT996885.1 Dialister massiliensis
83 2556306 2556482 + NZ_CP039126.1 Blautia producta
84 1496788 1496973 + NC_016048.1 Oscillibacter valericigenes Sjm18-20
85 3247830 3248006 - NC_016627.1 Acetivibrio clariflavus DSM 19732
86 778861 779037 - NZ_CP027002.1 [Ruminococcus] gnavus ATCC 29149
87 3363746 3363922 + NZ_CP070062.1 Coprococcus comes
88 1326469 1326645 + NZ_CP022413.2 Blautia hansenii DSM 20583
89 2098137 2098313 - NZ_CP030280.1 Blautia argi
90 1519361 1519537 + NC_014387.1 Butyrivibrio proteoclasticus B316
91 984967 985143 + NC_012778.1 [Eubacterium] eligens ATCC 27750
92 1149329 1149505 + NZ_CP032364.1 Lachnoanaerobaculum umeaense
93 386996 387175 - NZ_CP029462.1 Megasphaera stantonii
94 305384 305560 - NZ_LT990039.1 Massilistercora timonensis
95 3018891 3019067 - NZ_CP036170.1 [Clostridium] scindens ATCC 35704
96 1151281 1151463 + NC_015519.1 Tepidanaerobacter acetatoxydans Re1
97 1623330 1623506 + NZ_CP040058.1 Anaerostipes rhamnosivorans
98 1959253 1959429 - NZ_CP036345.1 Anaerostipes caccae L1-92
99 1138809 1138982 + NZ_LN879430.1 Herbinix luporum
100 390538 390711 + NZ_AP018202.1 Thermostichus vulcanus NIES-2134
101 35035 35208 - NC_004113.1 Thermosynechococcus vestitus BP-1
102 661020 661196 + NZ_CP046996.1 Dehalobacter restrictus
103 1598784 1598963 + NZ_CP009240.1 Megasphaera elsdenii 14-14
104 3099648 3099830 - NC_016894.1 Acetobacterium woodii DSM 1030
105 879047 879229 + NC_014624.2 Eubacterium callanderi
106 3741728 3741910 + NZ_CP029487.1 Eubacterium maltosivorans
107 2603095 2603277 + NZ_CP019962.1 Eubacterium limosum
108 2642481 2642660 - NZ_CP019698.1 Desulfotomaculum ferrireducens
109 2495170 2495346 - NZ_CP025197.1 Acetivibrio saccincola
110 3816289 3816465 + NZ_AP018449.1 Methylomusa anaerophila
111 2409404 2409580 - NZ_CP036259.1 Sporomusa termitida
112 1057689 1057865 + NZ_CP016502.1 Acetivibrio thermocellus DSM 2360
113 1955397 1955579 + NZ_CP048436.1 Flavonifractor plautii
114 3053971 3054162 + NC_019753.1 Crinalium epipsammum PCC 9333
115 3002353 3002529 - NZ_CP043998.1 Clostridium diolis
116 955725 955910 + NZ_CP009170.1 Thermoanaerobacter kivui
117 411483 411656 + NC_013895.2 Mageeibacillus indolicus UPII9-5
118 59877 60053 - NZ_CP022121.1 Dehalobacterium formicoaceticum
119 2228902 2229078 - NC_014376.1 [Clostridium] saccharolyticum WM1
120 3013607 3013783 + NZ_CP022464.2 Enterocloster bolteae
121 1476261 1476437 + NZ_LR699011.1 Roseburia hominis
122 1749935 1750111 + NZ_LR027880.1 Roseburia intestinalis L1-82
123 4071761 4071937 - NZ_CP048000.1 Anaerocolumna sedimenticola
124 1081800 1081985 + NC_015958.1 Thermoanaerobacter wiegelii Rt8.B1
125 1177300 1177479 + NC_015589.1 Desulfotomaculum ruminis DSM 2154
126 795856 796050 + NZ_CP038241.1 Allofrancisella inopinata
127 3601577 3601753 - NZ_AP023367.1 Anaerocolumna cellulosilytica
128 123104 123280 + NC_013385.1 Ammonifex degensii KC4
129 1360017 1360208 + NC_021184.1 Desulfoscipio gibsoniae DSM 7213
130 3196418 3196594 - NC_010001.1 Lachnoclostridium phytofermentans ISDg
131 949852 950046 + NZ_CP010427.1 Allofrancisella guangzhouensis
132 4372035 4372211 - NC_020291.1 Clostridium saccharoperbutylacetonicum N1-4(HMT)
133 1028431 1028607 + NC_020291.1 Clostridium saccharoperbutylacetonicum N1-4(HMT)
134 2450420 2450596 - NC_011898.1 Ruminiclostridium cellulolyticum H10
135 735475 735669 + NZ_CP038017.1 Allofrancisella frigidaquae
136 1560221 1560406 - NC_015555.1 Thermoanaerobacterium xylanolyticum LX-11
137 1218278 1218463 + NZ_CP047602.1 Thermoanaerobacterium aotearoense
138 1026067 1026231 + NZ_CP018092.1 Synechococcus lividus PCC 6715
139 1933993 1934169 + NZ_CP061336.1 Ruminiclostridium herbifermentans
140 239670 239843 - NZ_LR130778.1 Petrocella atlantisensis
141 3270976 3271152 - NZ_CP015756.1 Clostridium estertheticum subsp. estertheticum
142 2483493 2483705 - NC_007947.1 Methylobacillus flagellatus KT
143 991209 991394 + NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3
144 973425 973610 + NC_013921.1 Thermoanaerobacter italicus Ab9
145 1216341 1216526 + NC_014410.1 Thermoanaerobacterium thermosaccharolyticum DSM 571
146 1010444 1010623 - NZ_LR134524.1 Peptoniphilus harei
147 1654630 1654827 - NZ_CP009654.1 Francisella frigiditurris
148 2435732 2435908 + NC_010337.2 Heliomicrobium modesticaldum Ice1
149 882995 883192 + NC_017449.1 Francisella hispaniensis
150 1044920 1045102 - NC_023029.1 Francisella orientalis LADL--07-285A
151 1454613 1454810 - NC_015696.1 Francisella salina
152 864675 864872 - NZ_CP043552.1 Francisella marina
153 3053117 3053293 - NC_019903.1 Desulfitobacterium dichloroeliminans LMG P-21439
154 4166170 4166346 - NC_018068.1 Desulfosporosinus acidiphilus SJ4
155 1261858 1262031 + NC_010718.1 Natranaerobius thermophilus JW/NM-WN-LF
156 3079725 3079916 - NC_019689.1 Pleurocapsa sp. PCC 7327
157 2940885 2941061 - NZ_CP014176.1 Clostridium argentinense
158 798943 799140 + NZ_CP022375.1 Francisella opportunistica
159 1226983 1227180 - NZ_CP016796.1 Francisella uliginis
160 1709986 1710165 - NC_014220.1 Syntrophothermus lipocalidus DSM 12680
161 542318 542494 + NZ_CP017237.1 Moorella thermoacetica
162 2513265 2513477 - NC_012969.1 Methylovorus glucosetrophus SIP3-4
163 831362 831538 + NC_013740.1 Acidaminococcus fermentans DSM 20731
164 232559 232735 - NZ_CP025286.1 Ethanoligenens harbinense YUAN-3
165 1404468 1404653 - NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1
166 1331658 1331834 + NZ_AP019004.1 Phascolarctobacterium faecium
167 911498 911677 + NZ_LT632322.1 Murdochiella vaginalis
168 2311331 2311507 - NC_018870.1 Thermacetogenium phaeum DSM 12270
169 1404200 1404373 + NZ_AP017312.1 Aneurinibacillus soli
170 594030 594227 - NZ_CP012505.1 Francisella persica ATCC VR-331
171 2247989 2248201 - NC_012968.1 Methylotenera mobilis JLW8
172 2744296 2744508 - NC_014207.1 Methylotenera versatilis 301
173 4153295 4153471 - NC_018515.1 Desulfosporosinus meridiei DSM 13257
174 1569202 1569375 - NZ_CP016379.1 Anoxybacter fermentans
175 5190243 5190419 - NC_016584.1 Desulfosporosinus orientis DSM 765
176 2384444 2384620 + NZ_CP032627.1 Lactococcus allomyrinae
177 3727895 3728068 + NZ_CP017705.1 Brevibacillus laterosporus DSM 25
178 577250 577429 + NZ_LR134523.1 Peptoniphilus ivorii
179 413677 413853 + NZ_CP070872.1 Lactococcus taiwanensis
180 1716955 1717131 - NZ_CP045875.1 Heliorestis convoluta
181 226547 226723 + NC_022369.1 Lactococcus lactis subsp. cremoris KW2
182 2054172 2054348 - NZ_CP017194.1 Lactococcus carnosus
183 935730 935906 - NZ_CP023392.1 Lactococcus raffinolactis
184 107427 107603 + NZ_CP017195.1 Lactococcus paracarnosus
185 295954 296130 + NZ_CP014223.1 Anaerotignum propionicum DSM 1682
186 672478 672660 + NC_015437.1 Selenomonas sputigena ATCC 35185
187 1434126 1434302 - NC_017581.1 Streptococcus thermophilus JIM 8232
188 2293783 2293959 - NZ_CP027783.1 Tetragenococcus osmophilus
189 173131 173307 - NZ_CP065637.1 Lactococcus garvieae
190 1451062 1451238 - NZ_LR134275.1 Streptococcus vestibularis
191 804554 804730 + NZ_CP025536.1 Streptococcus pluranimalium
192 780041 780217 - NZ_CP014835.1 Streptococcus halotolerans
193 1086994 1087170 - NZ_LT906439.1 Streptococcus merionis
194 118309 118479 + NZ_CP031092.1 Salicibibacter kimchii
195 1431030 1431245 + NZ_CP042829.1 Tepidiforma bonchosmolovskayae
196 2026240 2026413 - NZ_CP009416.1 Jeotgalibacillus malaysiensis
197 2341914 2342084 - NZ_CP048104.1 Kroppenstedtia pulmonis
198 2282884 2283057 - NZ_CP012024.1 Bacillus smithii
199 23224 23397 + NZ_CP035485.1 Salicibibacter halophilus
200 2132876 2133049 - NZ_CP064060.1 Anoxybacillus caldiproteolyticus
201 2569998 2570171 - NZ_CP015438.1 Anoxybacillus amylolyticus
202 1959967 1960140 - NZ_CP012152.1 Anoxybacillus gonensis
203 141971 142162 - NZ_CP015402.2 Muribaculum intestinale
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_012489.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF09424.12 0.62 121 23 same-strand Yqey-like protein
++ More..