Result : C0ZZD2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega) |
| NCBI Accession ID | AP008957.1 |
| Organism | Rhodococcus erythropolis (strain PR4 / NBRC 100887) |
| Left | 3222794 |
| Right | 3223093 |
| Strand | + |
| Nucleotide Sequence | GTGAGCAGCACTTCAGCCGCGTCCGCAGCAGGTCAGGGCGCTCTGCCTGCCTACGACACCCCGCTCGGCATCACCAACCCGCCGATCGACGAGTTGCTCGAACGCACCTCTTCCAAGTACGCCCTGGTCATTTACTCGGCCAAGCGTGCGCGCCAGATCAACGACTACTACAACCAGCTCGGTGACGGCATCCTCGAGTACGTCGGACCTCTGGTCGAGCCCGGTCTGCAGGAAAAGCCGCTGTCCATCGCGTTGCGTGAAATCCACGCTGATCTCCTCGAGCACACCGAAGGCGAGTGA |
| Sequence | MSSTSAASAAGQGALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE |
| Source of smORF | Swiss-Prot |
| Function | Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. {ECO:0000255|HAMAP-Rule:MF_00366}. |
| Pubmed ID | |
| Domain | CDD:417484 |
| Functional Category | Others |
| Uniprot ID | C0ZZD2 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 202
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2994909 | 2995208 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 2 | 2497619 | 2497924 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 3 | 2094973 | 2095272 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 4 | 715360 | 715662 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 5 | 2478094 | 2478396 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 6 | 4621979 | 4622284 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 7 | 80321 | 80644 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 8 | 3827382 | 3827657 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 9 | 2779620 | 2779922 | + | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 10 | 2774694 | 2775008 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 11 | 3281512 | 3281769 | + | NZ_AP023396.1 | Nocardia wallacei |
| 12 | 2841459 | 2841773 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 13 | 1042128 | 1042430 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 14 | 2354760 | 2355062 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 15 | 906490 | 906765 | + | NZ_CP033972.1 | Gordonia insulae |
| 16 | 1824525 | 1824824 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 17 | 3402443 | 3402721 | + | NZ_AP017900.1 | Nocardia seriolae |
| 18 | 5248293 | 5248568 | - | NZ_LR134352.1 | Nocardia asteroides |
| 19 | 3897114 | 3897380 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 20 | 5271284 | 5271565 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 21 | 4287052 | 4287309 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 22 | 3185241 | 3185540 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 23 | 623583 | 623864 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 24 | 2064670 | 2064996 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 25 | 2495758 | 2496033 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 26 | 1640120 | 1640407 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 27 | 1565138 | 1565425 | + | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 28 | 1588479 | 1588766 | + | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 29 | 3746649 | 3746942 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 30 | 3346106 | 3346393 | + | NZ_AP022572.1 | Mycobacterium shottsii |
| 31 | 2397161 | 2397448 | + | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 32 | 3986165 | 3986452 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 33 | 3441660 | 3441959 | + | NZ_CP059694.1 | Gordonia rubripertincta |
| 34 | 2821052 | 2821330 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 35 | 2157733 | 2158020 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 36 | 5238519 | 5238806 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 37 | 269686 | 269979 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 38 | 2731159 | 2731437 | - | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 39 | 1024867 | 1025160 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 40 | 1829189 | 1829476 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 41 | 2702225 | 2702518 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 42 | 4782379 | 4782657 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 43 | 3919461 | 3919739 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 44 | 2262424 | 2262681 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 45 | 5843890 | 5844219 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 46 | 2412018 | 2412305 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 47 | 2406287 | 2406589 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 48 | 3219473 | 3219799 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 49 | 340061 | 340348 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 50 | 3840637 | 3840891 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 51 | 2654252 | 2654530 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 52 | 2548066 | 2548341 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 53 | 1032857 | 1033153 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 54 | 2672919 | 2673206 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 55 | 3875689 | 3875985 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 56 | 6191363 | 6191641 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 57 | 2098190 | 2098441 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 58 | 4396941 | 4397243 | - | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 59 | 4055896 | 4056177 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 60 | 5082405 | 5082707 | + | NZ_AP022596.1 | Mycolicibacterium helvum |
| 61 | 2685246 | 2685542 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 62 | 1327321 | 1327608 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 63 | 1260225 | 1260512 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 64 | 639049 | 639336 | + | NZ_CP029543.1 | Mycobacterium leprae |
| 65 | 2599460 | 2599738 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 66 | 155937 | 156263 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 67 | 4462872 | 4463186 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 68 | 1154368 | 1154655 | + | NZ_AP022601.1 | Mycobacterium gallinarum |
| 69 | 836933 | 837232 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 70 | 161113 | 161412 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 71 | 599504 | 599815 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 72 | 2024720 | 2025007 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 73 | 587626 | 587925 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 74 | 1276841 | 1277128 | - | NZ_AP022608.1 | Mycolicibacterium gadium |
| 75 | 448608 | 448907 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 76 | 2460704 | 2461018 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 77 | 4791999 | 4792280 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 78 | 3090031 | 3090339 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 79 | 1883309 | 1883569 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 80 | 2997728 | 2997982 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 81 | 2879946 | 2880254 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 82 | 2569045 | 2569353 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 83 | 2754877 | 2755185 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 84 | 2801163 | 2801471 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 85 | 2558596 | 2558904 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 86 | 2333489 | 2333773 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 87 | 2412774 | 2413034 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 88 | 3935850 | 3936110 | + | NZ_AP022562.1 | Mycobacterium novum |
| 89 | 2510606 | 2510866 | - | NC_015576.1 | Mycolicibacter sinensis |
| 90 | 4215220 | 4215480 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 91 | 5869 | 6129 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 92 | 4115702 | 4115980 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 93 | 2925225 | 2925476 | - | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 94 | 2257045 | 2257341 | + | NZ_CP027433.1 | Gordonia iterans |
| 95 | 2675327 | 2675578 | - | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 96 | 1934376 | 1934627 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 97 | 2285901 | 2286194 | + | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 98 | 1905456 | 1905707 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 99 | 1829881 | 1830165 | - | NZ_CP015449.1 | Dietzia lutea |
| 100 | 1869744 | 1870034 | - | NZ_CP015961.1 | Dietzia timorensis |
| 101 | 3041412 | 3041699 | + | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 102 | 8678160 | 8678438 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 103 | 80591 | 80884 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 104 | 6148060 | 6148338 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 105 | 6233884 | 6234162 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 106 | 7050542 | 7050820 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 107 | 9676772 | 9677050 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 108 | 2329960 | 2330229 | - | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 109 | 1951270 | 1951560 | + | NZ_CP045929.1 | Saccharopolyspora coralli |
| 110 | 1494151 | 1494444 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 111 | 670086 | 670367 | - | NZ_CP032788.1 | Corynebacterium xerosis |
| 112 | 8642367 | 8642660 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 113 | 3759659 | 3759931 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 114 | 1120839 | 1121087 | - | NZ_CP046883.1 | Corynebacterium anserum |
| 115 | 1354066 | 1354314 | + | NZ_CP006841.1 | Corynebacterium lactis RW2-5 |
| 116 | 511165 | 511413 | + | NZ_CP068168.1 | Corynebacterium amycolatum |
| 117 | 1341524 | 1341790 | - | NC_015673.1 | Corynebacterium resistens DSM 45100 |
| 118 | 468435 | 468716 | + | NZ_LT906481.1 | Corynebacterium urealyticum |
| 119 | 568362 | 568661 | + | NZ_CP042429.1 | Corynebacterium nuruki S6-4 |
| 120 | 1323263 | 1323511 | + | NZ_CP009248.1 | Corynebacterium sphenisci DSM 44792 |
| 121 | 1381502 | 1381789 | - | NC_021663.1 | Corynebacterium terpenotabidum Y-11 |
| 122 | 1471848 | 1472105 | - | NZ_CP009251.1 | Corynebacterium stationis |
| 123 | 1202178 | 1202426 | - | NZ_CP011312.1 | Corynebacterium kutscheri |
| 124 | 1491206 | 1491472 | + | NZ_LS483459.1 | Corynebacterium jeikeium |
| 125 | 1545159 | 1545455 | - | NZ_LR698967.1 | Corynebacterium ammoniagenes |
| 126 | 1389504 | 1389755 | - | NZ_CP019688.1 | Corynebacterium glaucum |
| 127 | 1346966 | 1347217 | - | NZ_CP039247.1 | Corynebacterium endometrii |
| 128 | 1829972 | 1830238 | - | NZ_CP011542.1 | Corynebacterium mustelae |
| 129 | 3280788 | 3281051 | - | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 130 | 1279452 | 1279766 | - | NZ_CP009215.1 | Corynebacterium ureicelerivorans |
| 131 | 313864 | 314115 | - | NZ_CP014635.1 | Corynebacterium simulans |
| 132 | 1787022 | 1787294 | + | NZ_CP006842.1 | Corynebacterium glyciniphilum AJ 3170 |
| 133 | 1307986 | 1308279 | + | NZ_CP067012.1 | Corynebacterium kefirresidentii |
| 134 | 1651645 | 1651914 | - | NZ_CP004353.1 | Corynebacterium vitaeruminis DSM 20294 |
| 135 | 1446471 | 1446764 | - | NZ_CP009246.1 | Corynebacterium flavescens |
| 136 | 1173705 | 1173977 | - | NC_012704.1 | Corynebacterium kroppenstedtii DSM 44385 |
| 137 | 1353438 | 1353707 | - | NZ_LR738855.1 | Corynebacterium rouxii |
| 138 | 1443075 | 1443368 | - | NZ_LS483460.1 | Corynebacterium minutissimum |
| 139 | 1854126 | 1854455 | + | NZ_CP038157.1 | Corynebacterium sanguinis |
| 140 | 2073365 | 2073646 | - | NZ_LS483464.1 | Corynebacterium renale |
| 141 | 336807 | 337085 | - | NZ_LT906443.1 | Corynebacterium ulcerans |
| 142 | 1369072 | 1369365 | + | NZ_CP010827.1 | Corynebacterium singulare |
| 143 | 1497647 | 1497955 | - | NZ_LT906467.1 | Corynebacterium imitans |
| 144 | 1229844 | 1230122 | - | NC_017301.2 | Corynebacterium pseudotuberculosis C231 |
| 145 | 1311179 | 1311445 | + | NC_012590.1 | Corynebacterium aurimucosum ATCC 700975 |
| 146 | 1045952 | 1046203 | + | NZ_LT906473.1 | Corynebacterium cystitidis |
| 147 | 1291479 | 1291739 | + | NZ_CP009249.1 | Corynebacterium phocae |
| 148 | 1323268 | 1323537 | - | NZ_LN831026.1 | Corynebacterium diphtheriae |
| 149 | 6675472 | 6675735 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 150 | 1832616 | 1832894 | - | NZ_AP017369.1 | Corynebacterium suranareeae |
| 151 | 1118800 | 1119048 | + | NZ_CP033898.1 | Corynebacterium pseudopelargi |
| 152 | 1118153 | 1118401 | + | NZ_CP035299.1 | Corynebacterium pelargi |
| 153 | 1550800 | 1551051 | - | NC_021915.1 | Corynebacterium maris DSM 45190 |
| 154 | 1619994 | 1620272 | - | NC_020506.1 | Corynebacterium callunae DSM 20147 |
| 155 | 1421423 | 1421701 | - | NZ_CP011541.1 | Corynebacterium epidermidicanis |
| 156 | 1262640 | 1262888 | - | NZ_CP033897.1 | Corynebacterium gerontici |
| 157 | 1638367 | 1638645 | - | NZ_CP009220.1 | Corynebacterium deserti GIMN1.010 |
| 158 | 1531368 | 1531655 | - | NZ_CP006764.1 | Corynebacterium doosanense CAU 212 = DSM 45436 |
| 159 | 1649712 | 1649990 | - | NZ_CP015622.1 | Corynebacterium crudilactis |
| 160 | 1818216 | 1818494 | - | NC_004369.1 | Corynebacterium efficiens YS-314 |
| 161 | 1133614 | 1133898 | + | NZ_CP026947.1 | Corynebacterium yudongzhengii |
| 162 | 723037 | 723312 | + | NZ_CP069485.1 | Corynebacterium glucuronolyticum |
| 163 | 759881 | 760153 | - | NZ_CP031194.1 | Streptomyces paludis |
| 164 | 1586665 | 1586943 | - | NZ_CP033896.1 | Corynebacterium choanae |
| 165 | 6781375 | 6781650 | + | NZ_CP048882.1 | Streptomyces bathyalis |
| 166 | 1260363 | 1260635 | - | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 167 | 1058887 | 1059177 | - | NC_022198.1 | Corynebacterium argentoratense DSM 44202 |
| 168 | 1482004 | 1482255 | - | NZ_CP011545.1 | Corynebacterium testudinoris |
| 169 | 1386958 | 1387239 | - | NZ_CP007790.1 | Corynebacterium marinum DSM 44953 |
| 170 | 1080051 | 1080323 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 171 | 2060888 | 2061190 | - | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 172 | 1644037 | 1644309 | - | NZ_CP019457.1 | Streptomyces lydicus |
| 173 | 1037892 | 1038173 | + | NZ_CP008944.1 | Corynebacterium atypicum |
| 174 | 1214837 | 1215118 | + | NZ_CP009247.1 | Corynebacterium frankenforstense DSM 45800 |
| 175 | 1917881 | 1918147 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 176 | 1348333 | 1348575 | - | NZ_CP011311.1 | Corynebacterium camporealensis |
| 177 | 1698316 | 1698597 | - | NC_020302.1 | Corynebacterium halotolerans YIM 70093 = DSM 44683 |
| 178 | 64262 | 64543 | - | NZ_CP068161.1 | Corynebacterium propinquum |
| 179 | 750245 | 750529 | + | NZ_CP022544.1 | Bifidobacterium pseudolongum |
| 180 | 683510 | 683794 | + | NZ_CP028341.1 | Bifidobacterium adolescentis |
| 181 | 1410641 | 1410925 | + | NZ_CP018044.1 | Bifidobacterium choerinum |
| 182 | 1251574 | 1251861 | - | NZ_CP011546.1 | Corynebacterium uterequi |
| 183 | 1587137 | 1587397 | - | NZ_CP009245.1 | Corynebacterium aquilae DSM 44791 |
| 184 | 811422 | 811706 | - | NZ_CP062938.1 | Bifidobacterium eulemuris |
| 185 | 1961958 | 1962242 | + | NZ_CP062948.1 | Bifidobacterium lemurum |
| 186 | 858111 | 858395 | + | NZ_AP012326.1 | Bifidobacterium dentium JCM 1195 = DSM 20436 |
| 187 | 3948334 | 3948603 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 188 | 665032 | 665316 | + | NZ_AP012325.1 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 |
| 189 | 731897 | 732181 | + | NZ_CP025199.1 | Bifidobacterium pseudocatenulatum |
| 190 | 1629965 | 1630249 | + | NZ_CP006712.1 | Bifidobacterium breve JCM 7017 |
| 191 | 281505 | 281762 | + | NZ_AP012334.1 | Scardovia inopinata JCM 12537 |
| 192 | 1736177 | 1736461 | + | NZ_CP026999.1 | Bifidobacterium longum |
| 193 | 610828 | 611088 | - | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 194 | 1945863 | 1946123 | - | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 195 | 1866178 | 1866438 | - | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 196 | 1601175 | 1601432 | - | NZ_AP012333.1 | Parascardovia denticolens DSM 10105 = JCM 12538 |
| 197 | 577234 | 577518 | + | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 198 | 1686294 | 1686551 | - | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 199 | 1760088 | 1760342 | - | NZ_CP044232.1 | Microbacterium lushaniae |
| 200 | 1789882 | 1790136 | - | NZ_CP038266.1 | Microbacterium wangchenii |
| 201 | 1133894 | 1134157 | + | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 202 | 2118689 | 2118952 | - | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 203 | 3317817 | 3318071 | - | NZ_CP035494.1 | Microbacterium protaetiae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP023172.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02786.19 | 0.8 | 162 | 2267.0 | same-strand | Carbamoyl-phosphate synthase L chain, ATP binding domain |
| 2 | PF02142.24 | 0.8 | 162 | 2269 | same-strand | MGS-like domain |
| 3 | PF02787.21 | 0.8 | 162 | 2267.0 | same-strand | Carbamoyl-phosphate synthetase large chain, oligomerisation domain |
| 4 | PF02222.24 | 0.78 | 158 | 2271.0 | same-strand | ATP-grasp domain |
| 5 | PF00215.26 | 0.91 | 184 | 1445.0 | same-strand | Orotidine 5'-phosphate decarboxylase / HUMPS family |
| 6 | PF00625.23 | 0.97 | 195 | 90 | same-strand | Guanylate kinase |
| 7 | PF04127.17 | 0.9 | 182 | 31.0 | same-strand | DNA / pantothenate metabolism flavoprotein |
| 8 | PF02441.21 | 0.91 | 183 | 31.0 | same-strand | Flavoprotein |
| 9 | PF02773.18 | 0.99 | 200 | 1414.0 | same-strand | S-adenosylmethionine synthetase, C-terminal domain |
| 10 | PF02772.18 | 0.99 | 200 | 1414.0 | same-strand | S-adenosylmethionine synthetase, central domain |
| 11 | PF00438.22 | 0.98 | 198 | 1414.0 | same-strand | S-adenosylmethionine synthetase, N-terminal domain |
| 12 | PF17764.3 | 0.61 | 124 | 2767.0 | same-strand | 3'DNA-binding domain (3'BD) |
++ More..