Result : C0QVH2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S20 |
| NCBI Accession ID | CP001357.1 |
| Organism | Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) |
| Left | 2313312 |
| Right | 2313575 |
| Strand | + |
| Nucleotide Sequence | ATGCCTAATATAGCTTCTGCATCTAAAAGATTAAGACAGAATGAAGTTAGAAATCTTTATAATAGAAAAATTAAAAGTTTCTTAAATACTCAAAAAAAGAAAGTAATCAAAGCAGTAGACAGCAATGATAAAAATCTTGCTTCAGAAGAATTCAAAAAATATGCTAGCGCTTTAGATAAAGCTGCTAGAAAATCTGTTATTCATGCTAATAGAGCAGCTGCTAAAAAATCTGATATGATGAAAAAAATTAATGCTATGAATTGA |
| Sequence | MPNIASASKRLRQNEVRNLYNRKIKSFLNTQKKKVIKAVDSNDKNLASEEFKKYASALDKAARKSVIHANRAAAKKSDMMKKINAMN |
| Source of smORF | Swiss-Prot |
| Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
| Pubmed ID | 19262690 |
| Domain | CDD:412349 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | C0QVH2 |
| ORF Length (Amino Acid) | 87 |
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| Conservation Analysis |
No. of Species: 8
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2123508 | 2123771 | + | NZ_CP046932.1 | Brachyspira hyodysenteriae |
| 2 | 1969666 | 1969929 | + | NZ_CP019914.1 | Brachyspira hampsonii |
| 3 | 3038594 | 3038857 | - | NC_017243.1 | Brachyspira intermedia PWS/A |
| 4 | 1469298 | 1469561 | - | NC_014150.1 | Brachyspira murdochii DSM 12563 |
| 5 | 1100774 | 1101037 | - | NC_014330.1 | Brachyspira pilosicoli 95/1000 |
| 6 | 7943012 | 7943284 | + | NZ_CP042914.1 | Roseimaritima ulvae |
| 7 | 5490058 | 5490339 | - | NZ_CP042912.1 | Mariniblastus fucicola |
| 8 | 3429591 | 3429857 | + | NZ_CP042593.1 | Bacillus dafuensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP046932.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF07719.19 | 0.62 | 5 | 1019 | opposite-strand | Tetratricopeptide repeat |
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