Protein Information |
Information Type | Description |
---|---|
Protein name | 30S ribosomal protein S20 |
NCBI Accession ID | CP001357.1 |
Organism | Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) |
Left | 2313312 |
Right | 2313575 |
Strand | + |
Nucleotide Sequence | ATGCCTAATATAGCTTCTGCATCTAAAAGATTAAGACAGAATGAAGTTAGAAATCTTTATAATAGAAAAATTAAAAGTTTCTTAAATACTCAAAAAAAGAAAGTAATCAAAGCAGTAGACAGCAATGATAAAAATCTTGCTTCAGAAGAATTCAAAAAATATGCTAGCGCTTTAGATAAAGCTGCTAGAAAATCTGTTATTCATGCTAATAGAGCAGCTGCTAAAAAATCTGATATGATGAAAAAAATTAATGCTATGAATTGA |
Sequence | MPNIASASKRLRQNEVRNLYNRKIKSFLNTQKKKVIKAVDSNDKNLASEEFKKYASALDKAARKSVIHANRAAAKKSDMMKKINAMN |
Source of smORF | Swiss-Prot |
Function | Binds directly to 16S ribosomal RNA. {ECO:0000255|HAMAP-Rule:MF_00500}. |
Pubmed ID | 19262690 |
Domain | CDD:412349 |
Functional Category | Ribosomal_protein |
Uniprot ID | C0QVH2 |
ORF Length (Amino Acid) | 87 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2123508 | 2123771 | + | NZ_CP046932.1 | Brachyspira hyodysenteriae |
2 | 1969666 | 1969929 | + | NZ_CP019914.1 | Brachyspira hampsonii |
3 | 3038594 | 3038857 | - | NC_017243.1 | Brachyspira intermedia PWS/A |
4 | 1469298 | 1469561 | - | NC_014150.1 | Brachyspira murdochii DSM 12563 |
5 | 1100774 | 1101037 | - | NC_014330.1 | Brachyspira pilosicoli 95/1000 |
6 | 7943012 | 7943284 | + | NZ_CP042914.1 | Roseimaritima ulvae |
7 | 5490058 | 5490339 | - | NZ_CP042912.1 | Mariniblastus fucicola |
8 | 3429591 | 3429857 | + | NZ_CP042593.1 | Bacillus dafuensis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF07719.19 | 0.62 | 5 | 1019 | opposite-strand | Tetratricopeptide repeat |