ProsmORF-pred
Result : A1STC9
Protein Information
Information Type Description
Protein name UPF0434 protein Ping_0902
NCBI Accession ID CP000510.1
Organism Psychromonas ingrahamii (strain 37)
Left 1132450
Right 1132629
Strand +
Nucleotide Sequence ATGTTAGACATTAAATTACTTGATATTATCGCCTGTCCATTATGCAAAGGTAAGTTAAGTTATAAAAAAAACAGCAATGAACTTATTTGTAAGTTTGATCATCTTGCCTACCCCGTTATTGACGGGATCCCTGCTCTGTTGAAAGTCAAAGCGCGTACCATCTCGTCCGATGAGGAGTAA
Sequence MLDIKLLDIIACPLCKGKLSYKKNSNELICKFDHLAYPVIDGIPALLKVKARTISSDEE
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl01066. Profile Description: Trm112p-like protein. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C-terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices.
Pubmed ID
Domain CDD:412721
Functional Category Others
Uniprot ID A1STC9
ORF Length (Amino Acid) 59
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 483
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1132450 1132629 + NC_008709.1 Psychromonas ingrahamii 37
2 3001868 3002047 - NZ_LS483422.1 Providencia heimbachae
3 1572681 1572860 + NZ_CP005974.1 Photobacterium gaetbulicola Gung47
4 2228005 2228184 - NZ_CP071325.1 Photobacterium ganghwense
5 3123122 3123301 - NZ_CP048796.1 Providencia vermicola
6 2704180 2704362 + NZ_CP014056.2 Grimontia hollisae
7 585622 585804 + NZ_CP051883.1 Aeromonas salmonicida
8 374660 374842 + NZ_CP044060.1 Aeromonas veronii
9 627394 627576 + NZ_CP065745.1 Aeromonas allosaccharophila
10 1637724 1637903 + NZ_CP070624.1 Photobacterium damselae subsp. damselae
11 2179059 2179238 + NZ_CP029736.1 Providencia rettgeri
12 735658 735837 + NZ_CP031123.2 Providencia huaxiensis
13 550594 550773 - NZ_CP037953.1 Permianibacter aggregans
14 2234353 2234508 - NZ_CP031781.1 Vibrio parahaemolyticus
15 1806160 1806339 - NZ_LT960611.1 Vibrio tapetis subsp. tapetis
16 993398 993577 + NZ_CP030788.1 Vibrio campbellii
17 2038292 2038471 - NZ_CP018312.1 Vibrio rotiferianus
18 789562 789741 - NZ_CP019959.1 Vibrio owensii
19 1279244 1279423 + NZ_CP009467.1 Vibrio harveyi
20 1178760 1178939 - NZ_CP025792.1 Vibrio jasicida 090810c
21 2100241 2100423 - NZ_CP047475.1 Vibrio astriarenae
22 1534941 1535123 - NZ_CP040021.1 Salinivibrio kushneri
23 1649502 1649681 - NZ_CP014035.2 Vibrio fluvialis
24 2630233 2630412 - NC_013456.1 Vibrio antiquarius
25 1860069 1860248 - NZ_CP009977.1 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
26 1019634 1019813 + NZ_CP032093.1 Vibrio alfacsensis
27 1592495 1592674 + NZ_CP040990.1 Vibrio furnissii
28 1722683 1722865 - NZ_CP044399.1 Moritella marina ATCC 15381
29 1468408 1468593 - NC_013166.1 Kangiella koreensis DSM 16069
30 2915677 2915847 - NZ_LR134376.1 Aeromonas encheleia
31 3698744 3698923 - NZ_CP023536.1 Providencia alcalifaciens
32 1096643 1096831 - NZ_LS483250.1 Moritella yayanosii
33 3396084 3396272 - NZ_CP048878.1 Spartinivicinus ruber
34 818496 818678 + NZ_CP028271.1 Mixta intestinalis
35 1875668 1875847 - NZ_AP014524.1 Vibrio cholerae MS6
36 2547547 2547726 + NZ_CP065150.1 Vibrio kanaloae
37 2210004 2210183 - NC_011753.2 Vibrio atlanticus
38 2174491 2174670 - NZ_CP039700.1 Vibrio cyclitrophicus
39 1581584 1581766 + NZ_CP061511.1 Mixta calida
40 367904 368092 + NZ_CP021376.1 Oceanisphaera avium
41 3878645 3878830 - NZ_CP047698.1 Pseudomonas knackmussii
42 38706 38861 + NZ_CP046793.1 Vibrio metschnikovii
43 1021517 1021696 + NZ_CP022741.1 Vibrio qinghaiensis
44 1448565 1448744 + NZ_CP046268.1 Vibrio spartinae
45 1681166 1681348 + NZ_CP063425.1 Kosakonia pseudosacchari
46 1795558 1795737 - NZ_CP016176.1 Xenorhabdus hominickii
47 1992799 1992981 - NC_009792.1 Citrobacter koseri ATCC BAA-895
48 1532169 1532348 - NZ_CP035688.1 Vibrio metoecus
49 2306836 2307015 - NZ_AP014635.1 Vibrio tritonius
50 39665 39847 - NZ_CP019706.1 Pantoea alhagi
51 1125411 1125590 + NZ_AP019651.1 Vibrio taketomensis
52 1684658 1684837 - NZ_AP019657.1 Vibrio ponticus
53 2928416 2928598 - NZ_AP023184.1 Buttiauxella agrestis
54 1710396 1710575 - NZ_AP012273.1 Thiolapillus brandeum
55 2428489 2428674 - NZ_CP017689.1 Thalassotalea crassostreae
56 2391364 2391543 - NZ_CP011451.1 Nitrosomonas communis
57 1874859 1875047 - NZ_CP040449.1 Aeromonas simiae
58 1368702 1368887 - NZ_CP025120.1 Kangiella profundi
59 3166234 3166416 - NZ_CP050851.1 Aeromonas hydrophila
60 3511092 3511274 + NZ_CP053416.1 Salmonella bongori
61 2083525 2083704 - NZ_CP009354.1 Vibrio tubiashii ATCC 19109
62 1951264 1951443 + NC_005126.1 Photorhabdus laumondii subsp. laumondii TTO1
63 2234318 2234500 + NC_008344.1 Nitrosomonas eutropha C91
64 3145006 3145188 + NZ_CP040428.1 Jejubacter calystegiae
65 1258467 1258646 - NZ_CP010975.1 Kangiella geojedonensis
66 1708439 1708621 + NZ_CP015113.1 Kosakonia radicincitans
67 2375563 2375736 + NC_011566.1 Shewanella piezotolerans WP3
68 2885653 2885832 + NZ_CP026364.1 Proteus hauseri
69 792440 792619 + NC_010554.1 Proteus mirabilis HI4320
70 993375 993557 + NZ_AP014857.1 Escherichia albertii
71 2325231 2325410 - NZ_CP044069.1 Vibrio vulnificus
72 2406974 2407156 - NC_010694.1 Erwinia tasmaniensis Et1/99
73 3483281 3483460 - NZ_CP053069.1 Usitatibacter rugosus
74 2874080 2874265 - NZ_LR215729.2 Pseudomonas marincola
75 1385305 1385487 - NZ_CP016337.1 Kosakonia sacchari
76 3239524 3239706 + NZ_CP065640.1 Serratia rubidaea
77 3482261 3482443 - NZ_CP014007.2 Kosakonia oryzae
78 1284741 1284920 + NZ_AP018724.1 Sulfurivermis fontis
79 1510523 1510702 - NZ_LR699119.1 Aquicella siphonis
80 1659361 1659543 + NZ_CP026377.1 Mixta gaviniae
81 1708755 1708955 + NZ_AP022188.1 Aeromonas media
82 1767961 1768140 - NZ_CP016414.1 Vibrio scophthalmi
83 2075171 2075353 + NZ_AP019755.1 Nitrosomonas stercoris
84 44686 44868 + NZ_CP057657.1 Escherichia fergusonii
85 1296249 1296431 - NZ_CP045300.1 Kosakonia arachidis
86 1491421 1491600 - NZ_AP018689.1 Vibrio aphrogenes
87 498832 499014 + NZ_CP023529.1 Lelliottia amnigena
88 2847796 2847942 - NC_008345.1 Shewanella frigidimarina NCIMB 400
89 2252294 2252473 - NZ_CP060401.1 Xenorhabdus nematophila
90 2348395 2348577 + NC_004757.1 Nitrosomonas europaea ATCC 19718
91 2599172 2599354 - NC_012880.1 Musicola paradisiaca Ech703
92 3057973 3058155 - NZ_LR134201.1 Cedecea lapagei
93 826828 827007 - NC_013892.1 Xenorhabdus bovienii SS-2004
94 2322528 2322710 - NZ_CP042220.2 Dickeya poaceiphila
95 471127 471294 - NZ_CP021377.1 Oceanisphaera profunda
96 2821258 2821425 + NZ_CP021106.3 Nitrosospira lacus
97 1180327 1180506 + NZ_AP018685.1 Vibrio rumoiensis
98 3036704 3036871 - NZ_CP006569.1 Sodalis praecaptivus
99 1857606 1857788 + NZ_LT906479.1 Serratia ficaria
100 3122353 3122499 - NZ_CP034015.1 Shewanella livingstonensis
101 426586 426756 + NZ_CP067057.1 Rahnella aceris
102 2640630 2640812 - NC_012912.1 Dickeya chrysanthemi Ech1591
103 2976835 2977017 - NZ_CP045845.1 Kluyvera intermedia
104 3190185 3190367 - NZ_CP013990.1 Leclercia adecarboxylata
105 807890 808087 - NC_011313.1 Aliivibrio salmonicida LFI1238
106 1824283 1824465 + NZ_LR134494.1 Serratia quinivorans
107 1885257 1885442 + NZ_AP022642.1 Pseudomonas otitidis
108 3273699 3273881 - NZ_CP023525.1 Cedecea neteri
109 3413044 3413196 - NC_009831.1 Shewanella sediminis HAW-EB3
110 1939055 1939234 - NZ_CP045350.1 Vibrio aquimaris
111 2596706 2596873 - NZ_CP012621.1 Zobellella denitrificans
112 4015354 4015536 + NZ_CP011254.1 Serratia fonticola
113 1707112 1707294 + NC_014306.1 Erwinia billingiae Eb661
114 4249093 4249275 - NZ_CP007044.2 Chania multitudinisentens RB-25
115 3983925 3984107 - NZ_CP051548.1 Phytobacter diazotrophicus
116 2748658 2748840 - NZ_CP011602.1 Phytobacter ursingii
117 1590757 1590939 + NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
118 1466352 1466534 + NZ_CP023567.1 Erwinia pyrifoliae
119 1829950 1830132 + NC_015567.1 Serratia plymuthica AS9
120 4454523 4454708 - NZ_CP048833.1 Pseudomonas multiresinivorans
121 2114748 2114933 + NZ_CP014158.1 Pseudomonas citronellolis
122 3672683 3672862 + NZ_CP011104.1 Photorhabdus thracensis
123 3680715 3680897 + NZ_CP011078.1 Yersinia ruckeri
124 676934 677122 + NZ_CP013816.1 Piscirickettsia salmonis
125 2159750 2159932 - NZ_CP034035.1 Brenneria rubrifaciens
126 2703065 2703211 - NZ_CP041036.1 Shewanella polaris
127 1609691 1609882 - NZ_CP014646.1 Thauera humireducens
128 2167732 2167914 + NZ_CP025799.1 Dickeya zeae
129 2236303 2236485 - NC_007947.1 Methylobacillus flagellatus KT
130 1425384 1425566 + NC_013961.1 Erwinia amylovora CFBP1430
131 1576965 1577144 + NZ_FO704550.1 Xenorhabdus doucetiae
132 940177 940359 + NZ_AP019312.1 Chromobacterium haemolyticum
133 2860944 2861123 - NZ_CP072455.1 Xenorhabdus budapestensis
134 4375549 4375731 + NZ_CP015137.1 Dickeya solani IPO 2222
135 2224232 2224414 + NC_014500.1 Dickeya dadantii 3937
136 586521 586703 - NZ_CP009460.1 Dickeya fangzhongdai
137 3010738 3010920 - NZ_CP035129.1 Kosakonia cowanii
138 4540766 4540948 + NZ_CP014136.1 Gibbsiella quercinecans
139 1786105 1786290 + NZ_CP068551.1 Pseudomonas khazarica
140 3767633 3767815 - NZ_CP050508.1 Raoultella terrigena
141 832637 832819 + NZ_CP011412.1 Sedimenticola thiotaurini
142 1767376 1767558 + NZ_CP048784.1 Serratia liquefaciens
143 2128568 2128753 + NZ_CP043311.1 Pseudomonas lalkuanensis
144 562365 562547 + NZ_AP018721.1 Sulfuritortus calidifontis
145 2840408 2840590 - NZ_LR134373.1 Yersinia pseudotuberculosis
146 3412036 3412218 + NZ_CP007230.1 Yersinia similis
147 2324944 2325129 + NZ_CP021425.1 Oleiphilus messinensis
148 3632708 3632890 - NZ_CP054254.1 Klebsiella variicola
149 1483595 1483762 + NZ_LS483470.1 Leminorella richardii
150 2921670 2921852 - NZ_CP054058.1 Scandinavium goeteborgense
151 1086282 1086461 + NZ_AP021884.1 Sulfuriferula plumbiphila
152 1301209 1301418 + NZ_CP021435.1 Halomonas beimenensis
153 3702110 3702295 - NZ_AP014862.1 Pseudomonas furukawaii
154 728585 728749 + NZ_CP012371.1 Nitrosospira briensis C-128
155 2075526 2075705 + NZ_AP021881.1 Sulfuriferula nivalis
156 2884508 2884690 + NZ_CP020388.1 Pluralibacter gergoviae
157 4135224 4135406 + NZ_AP019007.1 Enterobacter oligotrophicus
158 1699874 1700029 - NZ_CP033078.1 Vibrio zhugei
159 1546603 1546785 + NZ_CP012257.1 Cronobacter universalis NCTC 9529
160 3455840 3456001 + NZ_CP020465.1 Cognaticolwellia beringensis
161 2726802 2726984 - NZ_CP034036.1 Brenneria nigrifluens DSM 30175 = ATCC 13028
162 1190240 1190422 - NZ_CP034752.1 Jinshanibacter zhutongyuii
163 3232088 3232270 - NZ_CP071320.1 Serratia ureilytica
164 1358608 1358793 - NZ_CP045302.1 Azotobacter salinestris
165 2774905 2775087 + NC_007645.1 Hahella chejuensis KCTC 2396
166 1189655 1189828 - NC_007614.1 Nitrosospira multiformis ATCC 25196
167 1470936 1471118 + NZ_CP061527.1 Shigella dysenteriae
168 954458 954640 + NC_004337.2 Shigella flexneri 2a str. 301
169 970673 970855 + NC_000913.3 Escherichia coli str. K-12 substr. MG1655
170 1100316 1100498 + NC_002695.2 Escherichia coli O157:H7 str. Sakai
171 2694344 2694526 - NZ_CP051652.1 Pectobacterium carotovorum
172 1763003 1763188 - NZ_CP014262.1 Pseudomonas corrugata
173 4721338 4721523 - NZ_CP035088.1 Pseudomonas viciae
174 1120422 1120604 - NZ_CP009787.1 Yersinia rohdei
175 1013549 1013731 - NZ_CP009781.1 Yersinia aldovae 670-83
176 4028641 4028823 - NZ_CP054043.1 Yersinia mollaretii ATCC 43969
177 1824870 1825052 + NZ_CP043727.1 Yersinia canariae
178 1798554 1798736 + NZ_CP011118.1 Yersinia enterocolitica
179 1301574 1301756 + NZ_CP032487.1 Yersinia hibernica
180 1260889 1261065 - NZ_CP012418.1 Kangiella sediminilitoris
181 3855203 3855385 - NZ_CP036175.1 Klebsiella huaxiensis
182 97638 97808 + NZ_CP034759.1 Litorilituus sediminis
183 1818515 1818697 + NZ_CP038662.1 Serratia nematodiphila
184 1644571 1644753 + NZ_LR134340.1 Escherichia marmotae
185 2831379 2831561 - NZ_CP034938.1 Pectobacterium odoriferum
186 1885819 1886004 + NZ_CP068034.2 Pseudomonas syringae
187 1546011 1546193 + NZ_CP012264.1 Cronobacter condimenti 1330
188 1459209 1459394 + NC_012560.1 Azotobacter vinelandii DJ
189 2155987 2156169 + NZ_CP031560.1 Dickeya dianthicola
190 2117610 2117789 - NZ_FO704551.1 Xenorhabdus poinarii G6
191 3379203 3379385 - NZ_CP065838.1 Klebsiella quasipneumoniae
192 4834860 4835045 - NZ_CP034725.1 Pseudomonas brassicacearum
193 1454212 1454394 + NZ_CP015581.1 Tatumella citrea
194 2092390 2092572 + NZ_CP038498.1 Pectobacterium punjabense
195 1124503 1124685 + NZ_CP016948.1 Serratia surfactantfaciens
196 1608032 1608214 + NZ_AP022508.1 Enterobacter bugandensis
197 1588817 1588999 + NZ_CP027986.1 Enterobacter sichuanensis
198 1571975 1572157 + NZ_CP017184.1 Enterobacter roggenkampii
199 958172 958354 - NZ_CP025034.2 Enterobacter sp. SGAir0187
200 777128 777310 + NZ_CP017279.1 Enterobacter ludwigii
201 1865081 1865263 - NZ_CP045769.1 Enterobacter cancerogenus
202 1805178 1805360 + NZ_CP043318.1 Enterobacter chengduensis
203 1317975 1318160 + NZ_CP011835.1 Azotobacter chroococcum
204 1941599 1941784 + NZ_CP067022.1 Pseudomonas cannabina pv. alisalensis
205 3843485 3843667 + NZ_CP015750.1 Pectobacterium wasabiae CFBP 3304
206 2161679 2161861 + NZ_CP065044.1 Pectobacterium aroidearum
207 2463356 2463547 - NZ_CP043929.1 Methylomonas rhizoryzae
208 1694977 1695159 + NZ_CP012871.1 [Enterobacter] lignolyticus
209 1933018 1933200 - NZ_CP015749.1 Pectobacterium parmentieri
210 3229988 3230170 + NZ_LT556085.1 Citrobacter amalonaticus
211 3861626 3861808 - NZ_CP045205.1 Citrobacter telavivensis
212 2570145 2570315 - NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
213 2063621 2063803 - NZ_CP014137.1 Brenneria goodwinii
214 3689525 3689707 + NZ_CP047495.1 Pectobacterium brasiliense
215 3256265 3256444 - NC_012962.1 Photorhabdus asymbiotica
216 3736596 3736802 + NZ_CP016171.1 Bordetella bronchialis
217 3296846 3297028 - NZ_CP023009.1 Lonsdalea britannica
218 1889273 1889455 + NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
219 2105990 2106163 + NZ_CP049044.1 Pseudomonas psychrophila
220 943300 943467 + NZ_LN681225.1 Legionella hackeliae
221 1508644 1508829 + NZ_CP069213.1 Shewanella litorisediminis
222 895815 895997 + NZ_CP017482.1 Pectobacterium polaris
223 1831544 1831723 + NZ_CP022358.1 Shewanella bicestrii
224 1632573 1632758 + NC_008700.1 Shewanella amazonensis SB2B
225 1962693 1962866 + NZ_CP061079.1 Pseudomonas chlororaphis
226 2488387 2488569 - NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
227 2694492 2694674 - NZ_CP038853.1 Pantoea vagans
228 4478888 4479070 + NZ_CP033744.1 Citrobacter freundii
229 2207076 2207258 + NZ_CP009125.1 Pectobacterium atrosepticum
230 637239 637421 - NZ_CP044098.1 Citrobacter portucalensis
231 1832408 1832593 + NZ_CP042804.1 Pseudomonas amygdali pv. tabaci str. ATCC 11528
232 2597383 2597565 - NZ_CP013940.1 Cronobacter malonaticus LMG 23826
233 2905159 2905338 - NZ_CP053073.1 Usitatibacter palustris
234 2341259 2341426 - NZ_CP016397.1 Legionella clemsonensis
235 2056040 2056189 + NC_016901.1 Shewanella baltica OS678
236 1438240 1438422 + NZ_CP029185.2 Limnobaculum parvum
237 2854032 2854214 - NZ_CP028897.1 Dongshaea marina
238 1084715 1084897 + NC_013716.1 Citrobacter rodentium ICC168
239 2814200 2814382 - NZ_CP046293.1 Yersinia intermedia
240 1792280 1792435 - NZ_LT615228.1 Polynucleobacter necessarius
241 1132212 1132421 + NC_014532.2 Halomonas elongata DSM 2581
242 1556528 1556710 + NC_015968.1 Enterobacter soli
243 3360678 3360854 + NZ_LR778301.1 Denitratisoma oestradiolicum
244 4047887 4048072 + NZ_CP070505.1 Pseudomonas toyotomiensis
245 234868 235059 + NZ_CP012362.1 Oblitimonas alkaliphila
246 3642952 3643134 - NC_005085.1 Chromobacterium violaceum ATCC 12472
247 664736 664915 + NC_012969.1 Methylovorus glucosetrophus SIP3-4
248 1651503 1651700 + NZ_CP013232.1 Collimonas fungivorans
249 2446257 2446445 - NC_012691.1 Tolumonas auensis DSM 9187
250 4024974 4025156 - NZ_CP060111.1 Klebsiella michiganensis
251 4270017 4270202 - NZ_CP018420.1 Pseudomonas veronii
252 3700332 3700520 + NC_019940.1 Thioflavicoccus mobilis 8321
253 3479368 3479550 - NZ_CP041247.1 Raoultella electrica
254 1368076 1368261 + NZ_CP014870.1 Pseudomonas silesiensis
255 1678819 1678995 + NZ_CP050150.1 Hafnia alvei
256 4352705 4352890 - NC_004578.1 Pseudomonas syringae pv. tomato str. DC3000
257 1283197 1283376 + NZ_CP047349.1 Proteus terrae subsp. cibarius
258 1617600 1617782 + NZ_CP009756.1 Enterobacter cloacae
259 2335920 2336111 - NZ_CP028339.1 Thauera aromatica K172
260 3407824 3408015 - NZ_CP018839.1 Thauera chlorobenzoica
261 3415998 3416180 - NZ_LR134475.1 Klebsiella aerogenes
262 1692350 1692535 + NZ_CP041730.1 Chitinimonas arctica
263 3473583 3473756 - NZ_CP027723.1 Pseudomonas orientalis
264 3635726 3635911 - NZ_CP023272.1 Pseudomonas lurida
265 4852142 4852315 - NZ_CP062252.1 Pseudomonas allokribbensis
266 3649344 3649526 - NZ_CP046672.1 Raoultella ornithinolytica
267 3592150 3592335 - NZ_CP010896.1 Pseudomonas simiae
268 3867930 3868115 - NZ_CP027756.1 Pseudomonas synxantha
269 1186462 1186641 + NZ_AP022853.1 Sulfurimicrobium lacus
270 1807129 1807311 + NZ_LR134327.1 Aggregatibacter aphrophilus ATCC 33389
271 1377071 1377253 + NZ_CP034148.1 Pantoea agglomerans
272 2747127 2747309 - NZ_CP045720.1 Pantoea eucalypti
273 4301649 4301831 + NZ_CP049115.1 Pantoea stewartii
274 3015361 3015543 - NC_017554.1 Pantoea ananatis PA13
275 1294700 1294897 - NZ_AP017928.1 Methylocaldum marinum
276 3371735 3371917 + NZ_CP042941.1 Atlantibacter hermannii
277 1758717 1758902 + NZ_CP070503.1 Pseudomonas atacamensis
278 1738408 1738590 - NZ_CP038469.1 Citrobacter tructae
279 3595455 3595637 + NZ_CP026047.1 Raoultella planticola
280 1918583 1918765 - NC_022357.1 Sulfuricella denitrificans skB26
281 1208180 1208353 + NZ_CP022355.1 Paraphotobacterium marinum
282 5342303 5342476 - NZ_CP051487.1 Pseudomonas umsongensis
283 1439956 1440141 + NZ_CP012400.2 Pseudomonas yamanorum
284 1772302 1772454 + NZ_CP037951.1 Parashewanella tropica
285 651043 651228 + NZ_CP012676.1 Pseudomonas versuta
286 1440153 1440326 + NZ_CP062158.2 Pseudomonas lundensis
287 2252494 2252670 + NC_010506.1 Shewanella woodyi ATCC 51908
288 1035587 1035742 + NZ_LN614830.1 Tatlockia micdadei
289 987868 988044 + NZ_LR699114.1 Aquicella lusitana
290 3316343 3316528 - NZ_CP013124.1 Pseudomonas mendocina S5.2
291 2155015 2155188 + NC_009901.1 Shewanella pealeana ATCC 700345
292 2329599 2329787 - NZ_CP031093.1 Hydrocarboniclastica marina
293 1632514 1632696 - NZ_CP017707.1 Chromobacterium vaccinii
294 2405932 2406108 - NZ_CP022579.1 Oryzomicrobium terrae
295 2401436 2401618 - NZ_CP043473.1 Chromobacterium paludis
296 1161700 1161855 + NZ_CP013341.1 Nitrosomonas ureae
297 2140413 2140595 + NZ_LT615367.1 Dickeya aquatica
298 1727153 1727350 - NC_007481.1 Pseudoalteromonas translucida
299 1912353 1912550 - NZ_CP011036.1 Pseudoalteromonas nigrifaciens
300 4592098 4592271 - NZ_CP029608.1 Pseudomonas kribbensis
301 4824802 4824987 - NZ_CP062253.1 Pseudomonas gozinkensis
302 6051905 6052090 + NZ_CP048810.1 Pseudomonas bijieensis
303 277324 277497 - NZ_CP014205.2 Pseudomonas glycinae
304 3922743 3922898 - NZ_CP019628.1 Pseudoalteromonas aliena
305 2940473 2940664 - NC_015572.1 Methylomonas methanica MC09
306 772545 772730 - NZ_CP022987.1 Pusillimonas thiosulfatoxidans
307 2655248 2655433 + NZ_CP019343.1 Oceanicoccus sagamiensis
308 99774 99956 - NZ_LR134418.1 Legionella adelaidensis
309 3483574 3483759 - NZ_CP060009.1 Pseudomonas sediminis
310 1273697 1273876 - NZ_LR134374.1 Legionella spiritensis
311 2221577 2221753 + NC_003910.7 Colwellia psychrerythraea 34H
312 2271715 2271891 - NC_016041.1 Glaciecola nitratireducens FR1064
313 1459690 1459857 + NZ_AP018725.1 Sulfuriflexus mobilis
314 320135 320314 + NZ_CP038033.1 Nitrosococcus wardiae
315 1078788 1078973 + NZ_CP009533.1 Pseudomonas rhizosphaerae
316 2002603 2002788 + NZ_LS999205.1 Pseudomonas protegens CHA0
317 2232589 2232771 - NZ_CP031700.1 Neisseria zalophi
318 6375 6575 + NC_018868.3 Simiduia agarivorans SA1 = DSM 21679
319 320145 320327 - NZ_CP029495.1 Chromobacterium phragmitis
320 3021047 3021220 - NC_010334.1 Shewanella halifaxensis HAW-EB4
321 366769 366957 - NZ_CP018139.1 Halomonas aestuarii
322 2338954 2339130 - NC_012779.2 Edwardsiella ictaluri 93-146
323 1641123 1641311 - NZ_CP068285.1 Ralstonia syzygii subsp. celebesensis
324 3655739 3655924 - NZ_CP054205.1 Pseudomonas rhodesiae
325 1865061 1865219 + NZ_CP046378.1 Shewanella algae
326 5810252 5810425 + NZ_CP019038.1 Massilia putida
327 689653 689835 + NC_012968.1 Methylotenera mobilis JLW8
328 2608316 2608468 - NC_007954.1 Shewanella denitrificans OS217
329 72718 72873 + NZ_CP072133.1 Pseudoalteromonas xiamenensis
330 419553 419726 + NC_002971.4 Coxiella burnetii RSA 493
331 1438398 1438583 + NZ_CP014544.1 Zhongshania aliphaticivorans
332 2951870 2952043 - NZ_CP020472.1 Shewanella japonica
333 2082442 2082615 - NZ_CP005960.1 Pseudomonas mandelii JR-1
334 2466931 2467113 - NZ_LR134531.1 Pragia fontium
335 137772 137948 - NZ_CP006664.1 Edwardsiella anguillarum ET080813
336 1965987 1966184 - NZ_CP027523.1 Pseudoalteromonas carrageenovora
337 277467 277649 - NC_009379.1 Polynucleobacter asymbioticus QLW-P1DMWA-1
338 1727944 1728153 + NZ_CP065435.1 Halomonas sp. SS10-MC5
339 4074833 4074985 + NZ_CP052766.1 Alteromonas pelagimontana
340 1190165 1190338 - NZ_CP041783.1 Shewanella donghaensis
341 4853707 4853898 - NZ_CP014476.1 Methylomonas denitrificans
342 2049221 2049403 - NZ_CP065534.1 Lonsdalea populi
343 2153718 2153897 - NZ_CP013742.1 Legionella pneumophila
344 1335071 1335259 + NZ_CP011930.1 Herbaspirillum seropedicae
345 1847857 1848039 - NZ_CP027107.1 Cronobacter sakazakii
346 1247283 1247492 + NZ_CP014226.1 Halomonas chromatireducens
347 1065862 1066047 + NZ_CP020373.1 Shewanella khirikhana
348 1359553 1359735 + NZ_AP014879.1 Sulfuricaulis limicola
349 802160 802339 + NZ_CP038254.1 Legionella israelensis
350 1994307 1994489 + NZ_CP039731.1 Aquitalea aquatilis
351 1777734 1777910 + NZ_CP037952.1 Parashewanella spongiae
352 1896498 1896653 - NZ_CP033065.1 Pseudoalteromonas agarivorans
353 1718728 1718883 + NZ_CP023464.1 Pseudoalteromonas atlantica
354 1991259 1991414 - NZ_CP011028.1 Pseudoalteromonas espejiana DSM 9414
355 1074488 1074670 + NC_003197.2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
356 2431012 2431197 + NZ_CP053986.1 Achromobacter denitrificans
357 1989175 1989363 - NZ_CP013189.1 Pseudohongiella spirulinae
358 458231 458410 - NC_014315.1 Nitrosococcus watsonii C-113
359 2285652 2285861 + NZ_CP035503.1 Rhodoferax sediminis
360 3411453 3411641 + NZ_CP004387.1 Alcanivorax pacificus W11-5
361 4672370 4672555 - NZ_CP056030.1 Pseudomonas eucalypticola
362 1396312 1396488 + NZ_CP016043.1 Edwardsiella hoshinae
363 1737140 1737334 + NZ_CP072844.1 Psychrosphaera aestuarii
364 2123652 2123831 - NZ_LT906451.1 Legionella lansingensis
365 4585412 4585612 - NZ_CP022684.1 Ketobacter alkanivorans
366 2787413 2787592 - NC_014541.1 Ferrimonas balearica DSM 9799
367 1144488 1144676 - NZ_CP017754.1 Cupriavidus malaysiensis
368 2553777 2553956 - NZ_CP022272.1 Shewanella marisflavi
369 5510536 5510712 + NZ_CP046904.1 Massilia flava
370 1108727 1108927 + NZ_CP025682.1 Azoarcus pumilus
371 4014952 4015137 + NZ_CP048711.1 Kineobactrum salinum
372 1576900 1577085 + NZ_CP041335.1 Chitinolyticbacter meiyuanensis
373 724895 725077 + NC_014207.1 Methylotenera versatilis 301
374 879553 879720 + NZ_CP017715.1 Marinobacter salinus
375 1960795 1960980 - NZ_CP031146.1 Pseudomonas plecoglossicida
376 697920 698105 - NC_014394.1 Gallionella capsiferriformans ES-2
377 2422907 2423095 + NZ_CP054626.1 Cupriavidus gilardii
378 1409374 1409556 + NZ_LN907827.1 Erwinia gerundensis
379 1807889 1808068 - NZ_CP014782.1 Shewanella psychrophila
380 538088 538267 - NC_013960.1 Nitrosococcus halophilus Nc 4
381 118274 118462 - NZ_CP041660.1 Catenovulum sediminis
382 3033273 3033452 + NC_007484.1 Nitrosococcus oceani ATCC 19707
383 4135198 4135383 - NZ_CP007039.1 Pseudomonas cichorii JBC1
384 1811438 1811593 - NZ_CP011041.1 Pseudoalteromonas tetraodonis
385 1757963 1758118 - NZ_CP011030.1 Pseudoalteromonas issachenkonii
386 4360822 4360998 - NZ_HG322949.1 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
387 843431 843595 + NZ_CP025491.2 Legionella sainthelensi
388 3118350 3118529 - NC_014012.1 Shewanella violacea DSS12
389 1705767 1705952 + NZ_CP046621.1 Pseudomonas alkylphenolica
390 1760808 1760993 + NZ_CP022562.1 Pseudomonas monteilii
391 4427149 4427334 - NC_021505.1 Pseudomonas putida NBRC 14164
392 724283 724468 + NZ_CP009365.1 Pseudomonas soli
393 1933146 1933340 - NZ_AP014936.1 Sulfurifustis variabilis
394 1006139 1006327 + NZ_CP011257.1 Ralstonia mannitolilytica
395 1114624 1114803 + NC_008576.1 Magnetococcus marinus MC-1
396 4152989 4153174 - NZ_CP071706.1 Pseudomonas donghuensis
397 3338456 3338641 - NC_002516.2 Pseudomonas aeruginosa PAO1
398 498181 498375 - NC_014722.1 Mycetohabitans rhizoxinica HKI 454
399 2533363 2533515 - NZ_CP014322.1 Alteromonas addita
400 1681856 1682008 + NC_015554.1 Alteromonas naphthalenivorans
401 2016320 2016508 - NZ_CP011971.1 Steroidobacter denitrificans
402 1130635 1130823 + NZ_CP012943.1 Ralstonia solanacearum
403 2867146 2867334 + NZ_CP016022.1 Ralstonia insidiosa
404 5074607 5074783 - NZ_CP036401.1 Massilia albidiflava
405 1972023 1972217 + NZ_CP031769.1 Salinimonas sediminis
406 800461 800649 - NZ_CP062803.1 Cupriavidus basilensis
407 1268063 1268251 + NZ_CP037993.1 Herbaspirillum huttiense
408 1807265 1807462 + NZ_CP011025.1 Pseudoalteromonas arctica A 37-1-2
409 1877726 1877905 + NC_009092.1 Shewanella loihica PV-4
410 6662668 6662844 + NZ_CP040017.1 Massilia umbonata
411 2538654 2538848 + NZ_CP049134.1 Paraburkholderia tropica
412 3509132 3509311 + NZ_LT671418.1 Herminiimonas arsenitoxidans
413 1673433 1673618 + NC_008027.1 Pseudomonas entomophila L48
414 1679162 1679359 + NZ_CP032090.1 Pseudoalteromonas donghaensis
415 2037903 2038100 - NZ_CP013187.1 Pseudoalteromonas phenolica
416 3659899 3660096 - NZ_CP072425.1 Pseudoalteromonas viridis
417 35003 35173 + NZ_CP070273.1 Marinomonas foliarum
418 973847 974026 + NZ_CP014671.1 Immundisolibacter cernigliae
419 3054873 3055058 - NZ_CP036422.1 Halioglobus maricola
420 1698690 1698875 + NZ_CP024159.1 Pseudomonas mosselii
421 1226173 1226349 + NZ_CP029347.1 Saliniradius amylolyticus
422 2279935 2280132 - NZ_CP061081.1 Marinomonas arctica
423 555497 555688 - NZ_CP011568.3 Pandoraea thiooxydans
424 4073281 4073475 - NZ_CP013236.1 Collimonas pratensis
425 913359 913559 + NZ_CP060084.1 Teredinibacter haidensis
426 1523549 1523749 - NZ_AP021888.1 Thiosulfativibrio zosterae
427 934960 935133 + NZ_AP018722.1 Thiomicrorhabdus aquaedulcis
428 3043886 3044080 + NZ_CP013459.1 Burkholderia stagnalis
429 2272103 2272291 - NZ_CP031416.1 Gallaecimonas mangrovi
430 3304638 3304838 - NZ_CP013235.1 Collimonas arenae
431 1147243 1147431 + NZ_CP013737.1 Herbaspirillum rubrisubalbicans M1
432 617420 617626 - NZ_CP007031.1 Marichromatium purpuratum 984
433 1192253 1192462 + NZ_CP033040.1 Thiomicrorhabdus indica
434 3852649 3852843 + NZ_CP017940.1 Phyllobacterium zundukense
435 1625983 1626183 - NZ_AP021889.1 Thiosulfatimonas sediminis
436 1161432 1161629 + NZ_CP031961.1 Pseudoalteromonas tunicata
437 2997844 2998038 + NZ_CP020737.1 Paraburkholderia acidophila
438 3216141 3216335 + NZ_CP013414.1 Burkholderia ubonensis
439 1483685 1483885 - NZ_CP040602.1 Thiomicrorhabdus sediminis
440 2409652 2409840 + NC_008260.1 Alcanivorax borkumensis SK2
441 1823494 1823694 + NZ_CP017415.1 Acidihalobacter yilgarnenesis
442 29554 29736 - NZ_CP018787.1 Oxalobacter formigenes
443 1319894 1320070 + NC_017856.1 Methylophaga frappieri
444 4158252 4158419 - NZ_CP032694.1 Rhizobium jaguaris
445 1354036 1354221 - NC_013959.1 Sideroxydans lithotrophicus ES-1
446 4828790 4828978 - NZ_CP071678.1 Rhizobium ruizarguesonis
447 3503777 3503965 - NC_020059.1 Rhizobium tropici CIAT 899
448 2049773 2049970 + NZ_CP054301.1 Marinomonas primoryensis
449 2890252 2890407 + NZ_CP054021.1 Rhizobium indicum
450 772333 772509 - NZ_CP061004.1 Agrobacterium tumefaciens
451 1146720 1146920 + NZ_CP054020.1 Thiomicrorhabdus xiamenensis
452 719432 719608 - NZ_CP048635.1 Rhizobium oryzihabitans
453 3829420 3829608 - NZ_HG938353.1 Neorhizobium galegae bv. orientalis str. HAMBI 540
454 1120258 1120446 - NZ_LT906448.1 Pasteurella dagmatis
455 713623 713769 - NZ_CP053857.1 Rhizobium pusense
456 2363882 2364079 - NZ_CP009888.1 Pseudoalteromonas piratica
457 3485470 3485658 + NZ_CP015880.1 Ensifer adhaerens
458 1407897 1408076 + NZ_LT906442.1 Legionella waltersii
459 1608416 1608613 - NZ_CP011039.1 Pseudoalteromonas spongiae UST010723-006
460 546362 546526 + NC_016893.1 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)
461 1731329 1731520 - NC_013851.1 Allochromatium vinosum DSM 180
462 4639390 4639566 - NC_013510.1 Thermomonospora curvata DSM 43183
463 828257 828415 - NZ_AP019307.1 Nocardioides baekrokdamisoli
464 155081 155263 - NZ_CP015079.1 Nocardioides dokdonensis FR1436
465 2527522 2527704 - NZ_CP023696.1 Streptomyces fradiae ATCC 10745 = DSM 40063
466 2383361 2383543 - NZ_CP017316.1 Streptomyces rubrolavendulae
467 2685894 2686064 - NZ_CP021080.1 Streptomyces pluripotens
468 4878804 4878998 + NZ_CP041146.1 Nocardioides humi
469 3661305 3661475 - NZ_CP071839.1 Streptomyces cyanogenus
470 5901467 5901637 + NZ_CP017248.1 Streptomyces fodineus
471 9855921 9856091 - NZ_CP016279.1 Streptomyces griseochromogenes
472 3091252 3091422 - NZ_CP023407.1 Streptomyces fungicidicus
473 6115063 6115233 + NC_003155.5 Streptomyces avermitilis MA-4680 = NBRC 14893
474 3644185 3644355 - NC_021985.1 Streptomyces collinus Tu 365
475 2018022 2018186 - NZ_CP044344.1 Nocardioides cynanchi
476 4693666 4693836 + NZ_CP022310.1 Streptomyces calvus
477 5244978 5245148 + NZ_CP051006.1 Streptomyces griseofuscus
478 1244868 1245038 + NZ_CP063373.1 Streptomyces ferrugineus
479 4019338 4019514 - NZ_CP009896.1 Pimelobacter simplex
480 3639576 3639746 - NZ_CP015098.1 Streptomyces qaidamensis
481 1392715 1392879 - NZ_CP038267.1 Nocardioides euryhalodurans
482 4168625 4168795 + NZ_CP022744.1 Streptomyces lincolnensis
483 2731854 2732018 + NZ_CP038436.1 Nocardioides seonyuensis
484 2408971 2409141 - NZ_CP032229.1 Streptomyces seoulensis
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_008709.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF03772.18 0.66 317 2884.0 same-strand Competence protein
2 PF02606.16 0.85 410 37 same-strand Tetraacyldisaccharide-1-P 4'-kinase
3 PF02348.21 0.81 393 -3.0 same-strand Cytidylyltransferase
++ More..