Result : EXP04248
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP04248 |
| NCBI Accession ID | NC_004663.1 |
| Organism | Bacteroides thetaiotaomicron VPI-5482 |
| Left | 4594728 |
| Right | 4594793 |
| Strand | + |
| Nucleotide Sequence | ATGATTACTATTGAACAACTTAAAGACGTGAAAGAGCGCACTGATGCGCTGAGGAGGTATCTTTGA |
| Sequence | MITIEQLKDVKERTDALRRYL |
| Source of smORF | Protein-level |
| Function | |
| Pubmed ID | 31402174 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 21 |
++ More..
| Conservation Analysis |
No. of Species: 104
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4681059 | 4681124 | + | NZ_CP012938.1 | Bacteroides ovatus |
| 2 | 1896103 | 1896168 | + | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 3 | 381533 | 381598 | + | NZ_LN877293.1 | Bacteroides fragilis |
| 4 | 4806439 | 4806504 | + | NZ_CP015401.2 | Bacteroides caecimuris |
| 5 | 2799296 | 2799361 | + | NZ_CP045696.1 | Sodaliphilus pleomorphus |
| 6 | 2717684 | 2717749 | - | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 7 | 2481524 | 2481589 | + | NZ_LT906459.1 | Odoribacter splanchnicus |
| 8 | 2802421 | 2802483 | + | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 9 | 1887155 | 1887220 | + | NC_008571.1 | Gramella forsetii KT0803 |
| 10 | 1833725 | 1833790 | + | NZ_AP018042.1 | Labilibaculum antarcticum |
| 11 | 3182114 | 3182176 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 12 | 708196 | 708261 | - | NZ_CP018153.1 | Gramella salexigens |
| 13 | 2997692 | 2997757 | - | NZ_CP028136.1 | Gramella fulva |
| 14 | 3466543 | 3466608 | + | NZ_LT605205.1 | Proteiniphilum saccharofermentans |
| 15 | 3212569 | 3212634 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 16 | 4634017 | 4634082 | - | NZ_CP032819.1 | Butyricimonas faecalis |
| 17 | 2112712 | 2112777 | - | NZ_CP069450.1 | Butyricimonas virosa |
| 18 | 4932037 | 4932099 | - | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 19 | 42469 | 42531 | - | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 20 | 4036770 | 4036832 | + | NZ_CP048106.1 | Pontibacter pudoricolor |
| 21 | 418687 | 418752 | + | NZ_CP040812.1 | Antarcticibacterium flavum |
| 22 | 1977516 | 1977581 | + | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
| 23 | 4308624 | 4308686 | - | NZ_CP030041.1 | Echinicola strongylocentroti |
| 24 | 2495583 | 2495645 | - | NZ_CP040106.1 | Echinicola rosea |
| 25 | 2628100 | 2628162 | - | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 26 | 1700869 | 1700931 | - | NZ_CP047984.1 | Pontibacter russatus |
| 27 | 322468 | 322533 | - | NZ_CP041345.1 | Tenuifilum thalassicum |
| 28 | 2302482 | 2302544 | + | NZ_CP009621.1 | Pontibacter korlensis |
| 29 | 44470 | 44532 | + | NZ_CP021235.1 | Pontibacter actiniarum |
| 30 | 1390469 | 1390534 | - | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 31 | 2591208 | 2591270 | - | NC_018010.1 | Belliella baltica DSM 15883 |
| 32 | 2880264 | 2880326 | + | NZ_AP017422.1 | Filimonas lacunae |
| 33 | 4842526 | 4842588 | - | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 34 | 1915806 | 1915871 | - | NZ_CP017688.1 | Flavobacterium crassostreae |
| 35 | 3383761 | 3383826 | + | NZ_CP017479.1 | Flavobacterium gilvum |
| 36 | 1237499 | 1237564 | + | NZ_CP037933.1 | Flavobacterium nackdongense |
| 37 | 1414496 | 1414558 | + | NZ_CP050954.1 | Hymenobacter sp. BT18 |
| 38 | 2617014 | 2617079 | - | NZ_CP007451.1 | Draconibacterium orientale |
| 39 | 2484314 | 2484376 | + | NZ_CP048222.1 | Rhodocytophaga rosea |
| 40 | 1825675 | 1825740 | + | NC_016001.1 | Flavobacterium branchiophilum FL-15 |
| 41 | 93161 | 93226 | + | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 42 | 1174055 | 1174117 | - | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 43 | 1111915 | 1111977 | - | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 44 | 3037224 | 3037289 | - | NC_009441.1 | Flavobacterium johnsoniae UW101 |
| 45 | 3102451 | 3102516 | - | NZ_CP029255.1 | Flavobacterium crocinum |
| 46 | 5307912 | 5307977 | + | NZ_CP043612.1 | Flavobacterium nitrogenifigens |
| 47 | 131233 | 131298 | + | NZ_CP016907.1 | Flavobacterium anhuiense |
| 48 | 2032953 | 2033015 | + | NC_015703.1 | Runella slithyformis DSM 19594 |
| 49 | 1079771 | 1079833 | - | NZ_CP032382.1 | Chryseolinea soli |
| 50 | 2941713 | 2941778 | + | NZ_CP010817.1 | Myroides profundi |
| 51 | 2908129 | 2908194 | + | NZ_CP061703.1 | Mesoflavibacter profundi |
| 52 | 3076517 | 3076582 | - | NZ_CP029463.1 | Flavobacterium sediminis |
| 53 | 304701 | 304760 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 54 | 2389105 | 2389170 | - | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 55 | 1017612 | 1017668 | + | NZ_CP031093.1 | Hydrocarboniclastica marina |
| 56 | 1739414 | 1739479 | + | NZ_CP021904.1 | Alkalitalea saponilacus |
| 57 | 818304 | 818369 | - | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 58 | 1522494 | 1522559 | + | NZ_CP019288.1 | Kordia antarctica |
| 59 | 545735 | 545800 | + | NZ_LS483447.1 | Porphyromonas crevioricanis |
| 60 | 3044968 | 3045033 | + | NZ_LT608328.1 | Petrimonas mucosa |
| 61 | 3301865 | 3301930 | - | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 62 | 3111219 | 3111284 | - | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 63 | 623287 | 623352 | - | NZ_CP022378.1 | Capnocytophaga cynodegmi |
| 64 | 1230072 | 1230137 | - | NC_017025.1 | Flavobacterium indicum GPTSA100-9 = DSM 17447 |
| 65 | 2842746 | 2842811 | - | NZ_CP011071.1 | Muricauda lutaonensis |
| 66 | 3073441 | 3073506 | - | NZ_CP020918.1 | Flavobacterium faecale |
| 67 | 2761945 | 2762010 | + | NZ_CP053348.1 | Winogradskyella forsetii |
| 68 | 3984935 | 3984997 | - | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 69 | 3888802 | 3888867 | - | NZ_CP012898.1 | Algibacter alginicilyticus |
| 70 | 2407088 | 2407153 | + | NZ_CP053351.1 | Winogradskyella schleiferi |
| 71 | 2513759 | 2513821 | - | NZ_CP013909.1 | Hymenobacter sedentarius |
| 72 | 2996184 | 2996246 | + | NZ_CP010777.1 | Rufibacter radiotolerans |
| 73 | 1704954 | 1705016 | + | NZ_CP047897.1 | Nibribacter ruber |
| 74 | 2338770 | 2338832 | - | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 75 | 3723760 | 3723825 | - | NZ_CP054012.1 | Parabacteroides distasonis |
| 76 | 1491777 | 1491836 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 77 | 771315 | 771377 | + | NZ_CP012643.1 | Rufibacter tibetensis |
| 78 | 443016 | 443078 | - | NC_015510.1 | Haliscomenobacter hydrossis DSM 1100 |
| 79 | 3455384 | 3455449 | - | NZ_CP039456.1 | Changchengzhania lutea |
| 80 | 2690958 | 2691023 | - | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 81 | 2564651 | 2564716 | + | NZ_CP031188.1 | Flavobacterium arcticum |
| 82 | 2198695 | 2198760 | + | NZ_CP022387.1 | Capnocytophaga stomatis |
| 83 | 2873202 | 2873264 | + | NZ_CP014766.1 | Pontibacter akesuensis |
| 84 | 2751054 | 2751119 | + | NZ_CP028811.1 | Flavobacterium magnum |
| 85 | 5526 | 5591 | - | NZ_CP025791.1 | Flavivirga eckloniae |
| 86 | 3390593 | 3390658 | - | NZ_CP025938.1 | Tamlana carrageenivorans |
| 87 | 2673733 | 2673798 | - | NZ_CP029187.1 | Flavobacterium pallidum |
| 88 | 2464140 | 2464205 | + | NZ_CP038810.1 | Flavobacterium sangjuense |
| 89 | 3166915 | 3166980 | - | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 90 | 3493817 | 3493882 | + | NZ_CP029186.1 | Flavobacterium album |
| 91 | 3298755 | 3298820 | - | NZ_CP030104.1 | Flagellimonas maritima |
| 92 | 3002994 | 3003059 | + | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 93 | 1783412 | 1783474 | - | NZ_CP020105.1 | Spirosoma rigui |
| 94 | 1620426 | 1620488 | + | NZ_CP044285.1 | Hymenobacter baengnokdamensis |
| 95 | 920436 | 920501 | + | NZ_LR134506.1 | Porphyromonas cangingivalis |
| 96 | 403796 | 403861 | - | NC_015501.1 | Porphyromonas asaccharolytica DSM 20707 |
| 97 | 3277137 | 3277199 | - | NZ_CP040896.1 | Hymenobacter jejuensis |
| 98 | 3591411 | 3591473 | + | NZ_CP007145.1 | Hymenobacter swuensis DY53 |
| 99 | 1014964 | 1015026 | - | NZ_CP037922.1 | Hymenobacter radiodurans |
| 100 | 1845726 | 1845791 | + | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 101 | 2823640 | 2823705 | + | NZ_CP022379.1 | Capnocytophaga sputigena |
| 102 | 689741 | 689806 | + | NZ_LT906449.1 | Capnocytophaga haemolytica |
| 103 | 2287121 | 2287186 | + | NC_013162.1 | Capnocytophaga ochracea DSM 7271 |
| 104 | 3873398 | 3873463 | + | NZ_CP058595.1 | Costertonia aggregata |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012938.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03462.20 | 0.71 | 74 | 92.0 | same-strand | PCRF domain |
| 2 | PF00472.22 | 0.99 | 103 | 92 | same-strand | RF-1 domain |
++ More..