* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP040530.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00589.24
|
1.0
|
3
|
113.0
|
same-strand
|
Phage integrase family
|
2
|
PF13102.8
|
1.0
|
3
|
594
|
same-strand
|
Phage integrase SAM-like domain
|
3
|
PF17293.4
|
1.0
|
3
|
594
|
same-strand
|
Arm DNA-binding domain
|
4
|
PF12728.9
|
1.0
|
3
|
2638
|
opposite-strand
|
Helix-turn-helix domain
|
5
|
PF07669.13
|
0.67
|
2
|
3809.0
|
same-strand
|
Eco57I restriction-modification methylase
|
++ More..