* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP043404.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00011.23
|
1.0
|
5
|
-19
|
opposite-strand
|
Hsp20/alpha crystallin family
|
2
|
PF17886.3
|
1.0
|
5
|
-19
|
opposite-strand
|
HSP20-like domain found in ArsA
|
3
|
PF10676.11
|
1.0
|
5
|
790
|
same-strand
|
Spore germination protein gerPA/gerPF
|
4
|
PF13704.8
|
0.6
|
3
|
2632
|
opposite-strand
|
Glycosyl transferase family 2
|
5
|
PF13520.8
|
0.6
|
3
|
1060
|
opposite-strand
|
Amino acid permease
|
6
|
PF00324.23
|
0.6
|
3
|
1060
|
opposite-strand
|
Amino acid permease
|
7
|
PF13906.8
|
0.6
|
3
|
1060
|
opposite-strand
|
C-terminus of AA permease
|
8
|
PF00939.21
|
0.6
|
3
|
428
|
same-strand
|
Sodium:sulfate symporter transmembrane region
|
9
|
PF03600.18
|
0.6
|
3
|
428
|
same-strand
|
Citrate transporter
|
10
|
PF00905.24
|
0.6
|
3
|
2109
|
opposite-strand
|
Penicillin binding protein transpeptidase domain
|
11
|
PF03717.17
|
0.6
|
3
|
2109
|
opposite-strand
|
Penicillin-binding Protein dimerisation domain
|
12
|
PF05223.13
|
0.6
|
3
|
2109
|
opposite-strand
|
NTF2-like N-terminal transpeptidase domain
|
13
|
PF07690.18
|
0.6
|
3
|
4294
|
opposite-strand
|
Major Facilitator Superfamily
|
++ More..