* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP032621.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01497.20
|
0.67
|
2
|
3792.5
|
same-strand
|
Periplasmic binding protein
|
2
|
PF00005.29
|
0.67
|
2
|
2798
|
same-strand
|
ABC transporter
|
3
|
PF01032.20
|
0.67
|
2
|
1969.5
|
same-strand
|
FecCD transport family
|
4
|
PF03596.15
|
1.0
|
3
|
1099
|
same-strand
|
Cadmium resistance transporter
|
5
|
PF03741.18
|
1.0
|
3
|
1099
|
same-strand
|
Integral membrane protein TerC family
|
6
|
PF00312.24
|
1.0
|
3
|
15
|
same-strand
|
Ribosomal protein S15
|
7
|
PF07580.16
|
0.67
|
2
|
4450
|
same-strand
|
M26 IgA1-specific Metallo-endopeptidase C-terminal region
|
8
|
PF05342.16
|
0.67
|
2
|
4450
|
same-strand
|
M26 IgA1-specific Metallo-endopeptidase N-terminal region
|
9
|
PF07501.14
|
0.67
|
2
|
4450
|
same-strand
|
G5 domain
|
10
|
PF00746.23
|
0.67
|
2
|
3053.0
|
same-strand
|
LPXTG cell wall anchor motif
|
11
|
PF04650.19
|
0.67
|
2
|
4450
|
same-strand
|
YSIRK type signal peptide
|
++ More..