* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015875.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00005.29
|
0.75
|
3
|
4055.0
|
same-strand
|
ABC transporter
|
2
|
PF00128.26
|
0.75
|
3
|
3248
|
opposite-strand
|
Alpha amylase, catalytic domain
|
3
|
PF09154.12
|
0.75
|
3
|
3248
|
opposite-strand
|
Domain of unknown function (DUF1939)
|
4
|
PF01411.21
|
1.0
|
4
|
541.0
|
same-strand
|
tRNA synthetases class II (A)
|
5
|
PF02272.21
|
1.0
|
4
|
541.0
|
same-strand
|
DHHA1 domain
|
6
|
PF07973.16
|
1.0
|
4
|
541.0
|
same-strand
|
Threonyl and Alanyl tRNA synthetase second additional domain
|
7
|
PF04525.14
|
1.0
|
4
|
34.0
|
same-strand
|
LURP-one-related
|
8
|
PF13416.8
|
0.75
|
3
|
606
|
same-strand
|
Bacterial extracellular solute-binding protein
|
9
|
PF13343.8
|
0.75
|
3
|
606
|
same-strand
|
Bacterial extracellular solute-binding protein
|
10
|
PF01547.27
|
0.75
|
3
|
606
|
same-strand
|
Bacterial extracellular solute-binding protein
|
11
|
PF13531.8
|
0.75
|
3
|
606
|
same-strand
|
Bacterial extracellular solute-binding protein
|
++ More..