* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134336.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00163.21
|
1.0
|
5
|
43
|
same-strand
|
Ribosomal protein S4/S9 N-terminal domain
|
2
|
PF01479.27
|
0.8
|
4
|
43.0
|
same-strand
|
S4 domain
|
3
|
PF11966.10
|
0.6
|
3
|
1884
|
same-strand
|
SSURE domain
|
4
|
PF04650.19
|
0.6
|
3
|
1884
|
same-strand
|
YSIRK type signal peptide
|
5
|
PF00746.23
|
0.6
|
3
|
1884
|
same-strand
|
LPXTG cell wall anchor motif
|
6
|
PF00072.26
|
0.6
|
3
|
1105
|
same-strand
|
Response regulator receiver domain
|
7
|
PF00486.30
|
0.6
|
3
|
1105
|
same-strand
|
Transcriptional regulatory protein, C terminal
|
8
|
PF02518.28
|
0.6
|
3
|
66
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
9
|
PF00512.27
|
0.6
|
3
|
66
|
same-strand
|
His Kinase A (phospho-acceptor) domain
|
10
|
PF00672.27
|
0.6
|
3
|
66
|
same-strand
|
HAMP domain
|
++ More..