* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012938.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF08281.14
|
1.0
|
2
|
1100.0
|
opposite-strand
|
Sigma-70, region 4
|
2
|
PF04542.16
|
1.0
|
2
|
1100.0
|
opposite-strand
|
Sigma-70 region 2
|
3
|
PF04545.18
|
1.0
|
2
|
1100.0
|
opposite-strand
|
Sigma-70, region 4
|
4
|
PF07638.13
|
1.0
|
2
|
1100.0
|
opposite-strand
|
ECF sigma factor
|
5
|
PF04773.15
|
1.0
|
2
|
24.0
|
opposite-strand
|
FecR protein
|
6
|
PF16344.7
|
1.0
|
2
|
24.0
|
opposite-strand
|
Domain of unknown function (DUF4974)
|
7
|
PF00593.26
|
1.0
|
2
|
47.0
|
opposite-strand
|
TonB dependent receptor
|
8
|
PF07715.17
|
1.0
|
2
|
47.0
|
opposite-strand
|
TonB-dependent Receptor Plug Domain
|
9
|
PF13715.8
|
1.0
|
2
|
47.0
|
opposite-strand
|
CarboxypepD reg-like domain
|
10
|
PF13620.8
|
1.0
|
2
|
47.0
|
opposite-strand
|
Carboxypeptidase regulatory-like domain
|
11
|
PF07660.16
|
1.0
|
2
|
47.0
|
opposite-strand
|
Secretin and TonB N terminus short domain
|
12
|
PF14322.8
|
1.0
|
2
|
3514.0
|
opposite-strand
|
Starch-binding associating with outer membrane
|
13
|
PF01011.23
|
1.0
|
2
|
4933.0
|
opposite-strand
|
PQQ enzyme repeat
|
14
|
PF13360.8
|
1.0
|
2
|
4933.0
|
opposite-strand
|
PQQ-like domain
|
15
|
PF13570.8
|
1.0
|
2
|
4933.0
|
opposite-strand
|
PQQ-like domain
|
16
|
PF00041.23
|
1.0
|
2
|
4933.0
|
opposite-strand
|
Fibronectin type III domain
|
17
|
PF01261.26
|
1.0
|
2
|
6904.0
|
opposite-strand
|
Xylose isomerase-like TIM barrel
|
++ More..