* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01467.28
|
1.0
|
2
|
4488.0
|
opposite-strand
|
Cytidylyltransferase-like
|
2
|
PF07670.16
|
1.0
|
2
|
3251.0
|
same-strand
|
Nucleoside recognition
|
3
|
PF13180.8
|
1.0
|
2
|
1261.0
|
opposite-strand
|
PDZ domain
|
4
|
PF17820.3
|
1.0
|
2
|
1261.0
|
opposite-strand
|
PDZ domain
|
5
|
PF05636.13
|
1.0
|
2
|
-3.0
|
same-strand
|
HIGH Nucleotidyl Transferase
|
6
|
PF02620.19
|
1.0
|
2
|
28.0
|
opposite-strand
|
Large ribosomal RNA subunit accumulation protein YceD
|
7
|
PF01783.25
|
1.0
|
2
|
568.0
|
opposite-strand
|
Ribosomal L32p protein family
|
8
|
PF13248.8
|
1.0
|
2
|
568.0
|
opposite-strand
|
zinc-ribbon domain
|
9
|
PF13921.8
|
1.0
|
2
|
893.5
|
opposite-strand
|
Myb-like DNA-binding domain
|
10
|
PF00249.33
|
1.0
|
2
|
893.5
|
opposite-strand
|
Myb-like DNA-binding domain
|
11
|
PF02558.18
|
1.0
|
2
|
2173.0
|
opposite-strand
|
Ketopantoate reductase PanE/ApbA
|
12
|
PF08546.13
|
1.0
|
2
|
2173.0
|
opposite-strand
|
Ketopantoate reductase PanE/ApbA C terminal
|
++ More..