Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein YkzW |
NCBI Accession ID | AL009126.3 |
Organism | Bacillus subtilis (strain 168) |
Left | 1534120 |
Right | 1534239 |
Strand | + |
Nucleotide Sequence | ATGGGTACGATTGTTTGCCAAGATTGCAACGAAGCCATTCATTACTTTGAAGATGAGAAAGTGACAACATTATATGGAACTTGCTGCGGACAATGTCAATGTCCTGTTGATGAAGAGTAA |
Sequence | MGTIVCQDCNEAIHYFEDEKVTTLYGTCCGQCQCPVDEE |
Source of smORF | Swiss-Prot |
Function | The ORF matches to the profile of pfam13790. Profile Description: SR1 protein. This family of proteins is encoded by the dual function SR1 RNA. SR1 is a sRNA which regulates arginine metabolism, it also encodes a short protein that binds to glyceraldehyde-3-phosphate dehydrogenase (GapA) and stabilizes the gapA operon mRNAs. |
Pubmed ID | 9384377 |
Domain | CDD:372727 |
Functional Category | Others |
Uniprot ID | C0H410 |
ORF Length (Amino Acid) | 39 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1534120 | 1534239 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
2 | 1505830 | 1505949 | + | NZ_CP013984.1 | Bacillus inaquosorum |
3 | 1711036 | 1711155 | + | NZ_CP033052.1 | Bacillus vallismortis |
4 | 451325 | 451444 | - | NZ_CP029364.1 | Bacillus halotolerans |
5 | 1537678 | 1537797 | + | NZ_CP051464.1 | Bacillus mojavensis |
6 | 1439412 | 1439531 | + | NZ_CP048852.1 | Bacillus tequilensis |
7 | 1499222 | 1499341 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
8 | 1491777 | 1491896 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
9 | 2466705 | 2466824 | - | NZ_CP011937.1 | Bacillus velezensis |
10 | 1639937 | 1640056 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
11 | 1662551 | 1662670 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
12 | 1654184 | 1654303 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
13 | 99939 | 100058 | - | NZ_CP043404.1 | Bacillus safensis |
14 | 1433886 | 1434005 | + | NZ_CP011150.1 | Bacillus altitudinis |
15 | 263133 | 263252 | - | NZ_CP017786.1 | Bacillus xiamenensis |
16 | 2909315 | 2909440 | - | NZ_CP070511.1 | Parageobacillus toebii |
17 | 2746552 | 2746680 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
18 | 2746740 | 2746868 | - | NZ_CP024109.1 | Bacillus cytotoxicus |
19 | 484498 | 484620 | + | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
20 | 911735 | 911848 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
21 | 1673918 | 1674043 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
22 | 3992248 | 3992376 | - | NZ_CP032365.1 | Bacillus wiedmannii |
23 | 3992422 | 3992550 | - | NZ_CP032365.1 | Bacillus wiedmannii |
24 | 3985360 | 3985488 | - | NC_011725.1 | Bacillus cereus B4264 |
25 | 3985533 | 3985661 | - | NC_011725.1 | Bacillus cereus B4264 |
26 | 3850978 | 3851106 | - | NZ_CP064875.1 | Bacillus toyonensis |
27 | 3851152 | 3851280 | - | NZ_CP064875.1 | Bacillus toyonensis |
28 | 3825554 | 3825682 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
29 | 3825728 | 3825856 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
30 | 1379220 | 1379348 | + | NZ_CP040336.1 | Bacillus luti |
31 | 1379046 | 1379174 | + | NZ_CP040336.1 | Bacillus luti |
32 | 2700493 | 2700615 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
33 | 3259855 | 3259974 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
34 | 1389972 | 1390094 | - | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
35 | 1334893 | 1335018 | + | NZ_CP024035.1 | Priestia aryabhattai |
36 | 1530075 | 1530197 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
37 | 10709 | 10819 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00198.25 | 0.71 | 22 | 2271.5 | same-strand | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
2 | PF00364.24 | 0.71 | 22 | 2271.5 | same-strand | Biotin-requiring enzyme |
3 | PF02817.19 | 0.71 | 22 | 2271.5 | same-strand | e3 binding domain |
4 | PF07992.16 | 0.87 | 27 | 1341.0 | same-strand | Pyridine nucleotide-disulphide oxidoreductase |
5 | PF02852.24 | 0.87 | 27 | 1341.0 | same-strand | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain |
6 | PF00070.29 | 0.87 | 27 | 1341.0 | same-strand | Pyridine nucleotide-disulphide oxidoreductase |
7 | PF01276.22 | 1.0 | 31 | 118 | opposite-strand | Orn/Lys/Arg decarboxylase, major domain |
8 | PF05256.14 | 0.9 | 28 | 2759.0 | same-strand | Uncharacterised protein family (UPF0223) |
9 | PF06335.14 | 0.84 | 26 | 2689.5 | opposite-strand | Protein of unknown function (DUF1054) |
10 | PF00459.27 | 0.61 | 19 | 3310 | same-strand | Inositol monophosphatase family |