* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017581.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF06071.15
|
1.0
|
2
|
5194.0
|
same-strand
|
Protein of unknown function (DUF933)
|
2
|
PF01195.21
|
1.0
|
2
|
4323.0
|
same-strand
|
Peptidyl-tRNA hydrolase
|
3
|
PF02559.18
|
1.0
|
2
|
819.5
|
same-strand
|
CarD-like/TRCF domain
|
4
|
PF17757.3
|
1.0
|
2
|
819.5
|
same-strand
|
UvrB interaction domain
|
5
|
PF03461.17
|
1.0
|
2
|
819.5
|
same-strand
|
TRCF domain
|
6
|
PF00270.31
|
1.0
|
2
|
819.5
|
same-strand
|
DEAD/DEAH box helicase
|
7
|
PF00271.33
|
1.0
|
2
|
819.5
|
same-strand
|
Helicase conserved C-terminal domain
|
8
|
PF04851.17
|
1.0
|
2
|
819.5
|
same-strand
|
Type III restriction enzyme, res subunit
|
9
|
PF01479.27
|
1.0
|
2
|
362.5
|
same-strand
|
S4 domain
|
10
|
PF04977.17
|
1.0
|
2
|
0.0
|
same-strand
|
Septum formation initiator
|
11
|
PF13354.8
|
1.0
|
2
|
7.5
|
same-strand
|
Beta-lactamase enzyme family
|
12
|
PF19087.2
|
1.0
|
2
|
7.5
|
same-strand
|
Domain of unknown function (DUF5776)
|
13
|
PF01171.22
|
1.0
|
2
|
1293.5
|
same-strand
|
PP-loop family
|
14
|
PF00156.29
|
1.0
|
2
|
2601.0
|
same-strand
|
Phosphoribosyl transferase domain
|
15
|
PF01434.20
|
1.0
|
2
|
3172.5
|
same-strand
|
Peptidase family M41
|
16
|
PF00004.31
|
1.0
|
2
|
3172.5
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
17
|
PF17862.3
|
1.0
|
2
|
3172.5
|
same-strand
|
AAA+ lid domain
|
18
|
PF06480.17
|
1.0
|
2
|
3172.5
|
same-strand
|
FtsH Extracellular
|
++ More..