Result : EXP04064
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP04064 |
| NCBI Accession ID | |
| Organism | Actinomyces,Rothia |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGGTGGGAGTAGCTCAGTTGGCAGAGCGCTTGGTTGTGGTCCAGGAGGTCGCGGGTTCGAGCCCCGTCNGCCACCCGCTTAAGACCCCGGTTAATTCCGGGGNTTTATTTTATGTGCGGGGGNGAATTGCGCATGTCTTTTAA |
| Sequence | MVGVAQLAERLVVVQEVAGSSPVXHPLKTPVNSGXLFYVRGXIAHVF |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 47 |
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| Conservation Analysis |
No. of Species: 10
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1561918 | 1562061 | - | NZ_CP012117.1 | Dermabacter vaginalis |
| 2 | 1847259 | 1847408 | - | NZ_LT996886.1 | Tessaracoccus timonensis |
| 3 | 558207 | 558356 | - | NZ_CP007490.1 | Rhodoluna lacicola |
| 4 | 1811702 | 1811854 | - | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 5 | 2674573 | 2674689 | + | NZ_CP029043.1 | Streptomyces nigra |
| 6 | 433671 | 433796 | + | NZ_CP066065.1 | Schaalia meyeri |
| 7 | 1039117 | 1039248 | - | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 8 | 58319 | 58471 | + | NZ_LT635457.1 | Actinomyces pacaensis |
| 9 | 2301230 | 2301361 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 10 | 4702270 | 4702392 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012117.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00929.26 | 0.8 | 8 | 81.5 | same-strand | Exonuclease |
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