Result : A1R4R0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (Asp/Glu-ADT subunit C) (EC 6.3.5.-) |
| NCBI Accession ID | CP000474.1 |
| Organism | Paenarthrobacter aurescens (strain TC1) |
| Left | 1586100 |
| Right | 1586396 |
| Strand | + |
| Nucleotide Sequence | ATGGCTGCGATCAACCGTGACGACGTCGCGCATCTTGCGCGTCTGGCTCACATTGAAATGAGTGCCGAAGAACTGGACAGGATGGCTGTTGAGCTTGCTGTCATCGTGGATTCGGTGAAGAGCGTGAGCGAAGCTGCGGGTGAGGACGTCCCGGCGACGTCGCACCCGATTCCGTTGACCAATGTGTTCCGTGAGGACGTTGTGGGCCACACGTTCACAGCTGAGCAGGCGTTGTCCGGCGCTCCGGATTCTTACGAGAACCGTTTCAAGGTCCCGGCAATCCTGGATGAGGACTAA |
| Sequence | MAAINRDDVAHLARLAHIEMSAEELDRMAVELAVIVDSVKSVSEAAGEDVPATSHPIPLTNVFREDVVGHTFTAEQALSGAPDSYENRFKVPAILDED |
| Source of smORF | Swiss-Prot |
| Function | Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). {ECO:0000255|HAMAP-Rule:MF_00122}. |
| Pubmed ID | 17194220 |
| Domain | CDD:412411 |
| Functional Category | Others |
| Uniprot ID | A1R4R0 |
| ORF Length (Amino Acid) | 98 |
++ More..
| Conservation Analysis |
No. of Species: 270
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1589670 | 1589966 | + | NZ_CP068013.1 | Paenarthrobacter ureafaciens |
| 2 | 732300 | 732596 | + | NZ_CP013745.1 | Arthrobacter alpinus |
| 3 | 1710496 | 1710792 | + | NZ_CP029642.1 | Arthrobacter dokdonellae |
| 4 | 3476570 | 3476866 | + | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 5 | 1096055 | 1096351 | + | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 6 | 1759928 | 1760224 | - | NZ_CP011005.1 | Psychromicrobium lacuslunae |
| 7 | 943465 | 943761 | + | NZ_LR131272.1 | Arthrobacter agilis |
| 8 | 1063345 | 1063641 | - | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 9 | 1821553 | 1821849 | + | NZ_CP013254.1 | Kocuria flava |
| 10 | 2020715 | 2021011 | - | NZ_CP012507.1 | Kocuria palustris |
| 11 | 1871592 | 1871888 | - | NZ_CP056080.1 | Rothia nasimurium |
| 12 | 900933 | 901229 | + | NZ_CP035504.1 | Kocuria indica |
| 13 | 771301 | 771597 | + | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 14 | 1884170 | 1884466 | - | NZ_CP061539.1 | Rothia terrae |
| 15 | 1769568 | 1769864 | - | NZ_CP061538.1 | Rothia amarae |
| 16 | 670894 | 671190 | + | NZ_LR134479.1 | Rothia aeria |
| 17 | 964318 | 964614 | + | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 18 | 992147 | 992443 | + | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 19 | 3432566 | 3432862 | + | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 20 | 7734509 | 7734808 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 21 | 2282237 | 2282533 | - | NZ_CP016282.1 | Cryobacterium arcticum |
| 22 | 8072611 | 8072910 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 23 | 7246617 | 7246916 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 24 | 406659 | 406955 | - | NZ_CP022316.1 | Brachybacterium avium |
| 25 | 4380408 | 4380704 | + | NZ_CP030033.1 | Cryobacterium soli |
| 26 | 1649863 | 1650159 | + | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 27 | 313143 | 313442 | - | NZ_CP038436.1 | Nocardioides seonyuensis |
| 28 | 2111053 | 2111349 | + | NZ_CP023563.1 | Brachybacterium vulturis |
| 29 | 3716310 | 3716609 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 30 | 5675037 | 5675333 | + | NC_016109.1 | Kitasatospora setae KM-6054 |
| 31 | 4970446 | 4970745 | + | NZ_CP041146.1 | Nocardioides humi |
| 32 | 1626361 | 1626657 | + | NZ_CP023564.1 | Brachybacterium ginsengisoli |
| 33 | 1375414 | 1375719 | + | NC_009380.1 | Salinispora tropica CNB-440 |
| 34 | 2643732 | 2644028 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 35 | 107772 | 108077 | + | NZ_CP045309.1 | Micromonospora terminaliae |
| 36 | 1213646 | 1213951 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 37 | 1297373 | 1297678 | + | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 38 | 4751224 | 4751520 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 39 | 1872638 | 1872937 | + | NZ_CP016174.1 | Amycolatopsis orientalis |
| 40 | 5288376 | 5288672 | + | NZ_CP029043.1 | Streptomyces nigra |
| 41 | 3053701 | 3054000 | - | NZ_CP017146.1 | Marisediminicola antarctica |
| 42 | 3933835 | 3934134 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 43 | 5956144 | 5956440 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 44 | 1593343 | 1593639 | - | NC_020990.1 | Streptomyces albidoflavus |
| 45 | 1968502 | 1968798 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 46 | 2118820 | 2119116 | - | NC_013172.1 | Brachybacterium faecium DSM 4810 |
| 47 | 2404525 | 2404821 | - | NZ_CP023701.1 | Streptomyces subrutilus |
| 48 | 3171862 | 3172158 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 49 | 1515649 | 1515945 | - | NZ_CP031356.1 | Brachybacterium saurashtrense |
| 50 | 3126285 | 3126581 | - | NZ_CP045643.1 | Streptomyces fagopyri |
| 51 | 6538776 | 6539072 | + | NZ_CP022685.1 | Streptomyces formicae |
| 52 | 7039732 | 7040031 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 53 | 5609552 | 5609848 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 54 | 1363018 | 1363317 | - | NZ_CP028129.1 | Rathayibacter rathayi |
| 55 | 1635361 | 1635660 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 56 | 3372343 | 3372639 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 57 | 10177578 | 10177820 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 58 | 994345 | 994620 | + | NZ_CP049257.1 | Nocardioides anomalus |
| 59 | 5430024 | 5430320 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 60 | 5894495 | 5894791 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 61 | 1845528 | 1845827 | - | NZ_CP026949.1 | Mycetocola zhujimingii |
| 62 | 204278 | 204601 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 63 | 2804508 | 2804804 | - | NZ_CP034687.1 | Streptomyces griseoviridis |
| 64 | 6299736 | 6300032 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 65 | 2806839 | 2807135 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 66 | 6141977 | 6142273 | + | NZ_CP023691.1 | Streptomyces platensis |
| 67 | 2618161 | 2618457 | - | NZ_CP026652.1 | Streptomyces dengpaensis |
| 68 | 5641734 | 5642030 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 69 | 6375047 | 6375343 | + | NZ_CP027306.1 | Streptomyces atratus |
| 70 | 5574286 | 5574582 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 71 | 5969502 | 5969798 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 72 | 6175250 | 6175546 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 73 | 5351258 | 5351554 | + | NZ_AP023439.1 | Streptomyces tuirus |
| 74 | 2049494 | 2049790 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 75 | 2302082 | 2302378 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 76 | 1838859 | 1839155 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 77 | 5571494 | 5571790 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 78 | 1484156 | 1484455 | + | NZ_CP011502.1 | Aeromicrobium erythreum |
| 79 | 1666134 | 1666433 | - | NZ_CP015515.1 | Rathayibacter tritici |
| 80 | 6255960 | 6256256 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 81 | 8042580 | 8042876 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 82 | 6104947 | 6105243 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 83 | 5753024 | 5753320 | + | NZ_CP031194.1 | Streptomyces paludis |
| 84 | 916967 | 917266 | - | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 85 | 5289512 | 5289808 | + | NZ_CP021080.1 | Streptomyces pluripotens |
| 86 | 5933833 | 5934129 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 87 | 3354254 | 3354550 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 88 | 5345619 | 5345915 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 89 | 3058660 | 3058956 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 90 | 1736539 | 1736844 | + | NZ_CP058322.1 | Micromonospora carbonacea |
| 91 | 6273809 | 6274105 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 92 | 1324101 | 1324397 | + | NZ_CP030862.1 | Streptomyces globosus |
| 93 | 6645552 | 6645848 | + | NZ_CP023690.1 | Streptomyces spectabilis |
| 94 | 1569853 | 1570128 | + | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 95 | 2417663 | 2417962 | - | NZ_CP047180.1 | Rathayibacter festucae |
| 96 | 5760071 | 5760367 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 97 | 1753118 | 1753414 | - | NZ_CP065253.1 | Streptomyces clavuligerus |
| 98 | 1963074 | 1963370 | - | NZ_CP048882.1 | Streptomyces bathyalis |
| 99 | 6164172 | 6164468 | + | NZ_CP023407.1 | Streptomyces fungicidicus |
| 100 | 2082333 | 2082629 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 101 | 8407161 | 8407460 | - | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 102 | 2364181 | 2364477 | - | NZ_CP022310.1 | Streptomyces calvus |
| 103 | 2389479 | 2389775 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 104 | 2460049 | 2460357 | - | NZ_CP045737.1 | Aeromicrobium yanjiei |
| 105 | 6527607 | 6527903 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 106 | 6687226 | 6687522 | + | NZ_CP070326.1 | Streptomyces noursei |
| 107 | 3362951 | 3363250 | + | NZ_CP060713.1 | Nocardioides mesophilus |
| 108 | 775069 | 775365 | - | NZ_LN849456.1 | Devriesea agamarum |
| 109 | 2978329 | 2978625 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 110 | 5923988 | 5924284 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 111 | 5595362 | 5595658 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 112 | 5937449 | 5937745 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 113 | 6521471 | 6521767 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 114 | 2684563 | 2684859 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 115 | 1482044 | 1482340 | - | NZ_CP012117.1 | Dermabacter vaginalis |
| 116 | 5867681 | 5867977 | + | NZ_CP070242.1 | Streptomyces californicus |
| 117 | 4699297 | 4699593 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 118 | 4885716 | 4886012 | + | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 119 | 5739246 | 5739542 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 120 | 2870389 | 2870685 | - | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 121 | 7271588 | 7271884 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 122 | 3807988 | 3808287 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 123 | 5829268 | 5829564 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 124 | 2867491 | 2867787 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 125 | 3717122 | 3717436 | + | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 126 | 2897471 | 2897767 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 127 | 3057549 | 3057845 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 128 | 441526 | 441801 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 129 | 4413045 | 4413341 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 130 | 5573015 | 5573311 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 131 | 5505333 | 5505629 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 132 | 2655163 | 2655459 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 133 | 2307021 | 2307317 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 134 | 4605959 | 4606258 | + | NZ_CP009922.3 | Streptomyces xiamenensis |
| 135 | 5116571 | 5116867 | + | NZ_CP015866.1 | Streptomyces parvulus |
| 136 | 2172240 | 2172536 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 137 | 4702219 | 4702518 | + | NZ_CP054938.1 | Streptomyces harbinensis |
| 138 | 4089481 | 4089780 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 139 | 2655862 | 2656158 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 140 | 4647675 | 4647971 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 141 | 7516298 | 7516594 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 142 | 655788 | 656084 | + | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 143 | 1725858 | 1726157 | - | NZ_CP047186.1 | Rathayibacter tanaceti |
| 144 | 1629800 | 1630096 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 145 | 4865738 | 4866034 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 146 | 4280374 | 4280673 | + | NZ_CP016793.1 | Lentzea guizhouensis |
| 147 | 4634104 | 4634400 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 148 | 5293178 | 5293474 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 149 | 6618851 | 6619147 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 150 | 4632758 | 4633054 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 151 | 7551195 | 7551491 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 152 | 1092505 | 1092804 | - | NZ_CP028130.1 | Rathayibacter iranicus |
| 153 | 2424561 | 2424857 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 154 | 6920994 | 6921293 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 155 | 247539 | 247811 | - | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 156 | 5213020 | 5213316 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 157 | 3103197 | 3103493 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 158 | 2050431 | 2050730 | - | NZ_CP015449.1 | Dietzia lutea |
| 159 | 1334944 | 1335243 | + | NZ_CP020715.1 | Cnuibacter physcomitrellae |
| 160 | 985278 | 985574 | + | NZ_CP051884.1 | Cellulomonas taurus |
| 161 | 3311673 | 3311972 | - | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 162 | 7077238 | 7077534 | + | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 163 | 1505848 | 1506147 | + | NZ_CP022752.1 | Actinopolyspora erythraea |
| 164 | 6026470 | 6026766 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 165 | 3161563 | 3161859 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 166 | 2356729 | 2357025 | - | NC_015588.1 | Isoptericola variabilis 225 |
| 167 | 1361860 | 1362132 | - | NZ_CP019606.1 | Tessaracoccus aquimaris |
| 168 | 2509796 | 2510095 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 169 | 2670230 | 2670469 | - | NZ_CP026734.1 | Brevibacterium linens |
| 170 | 5131747 | 5132046 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 171 | 3381350 | 3381646 | - | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 172 | 7993887 | 7994186 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 173 | 997474 | 997773 | + | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 174 | 6948104 | 6948403 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 175 | 825194 | 825490 | + | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 176 | 7087156 | 7087455 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 177 | 8998022 | 8998321 | + | NZ_AP022870.1 | Phytohabitans flavus |
| 178 | 5654741 | 5654983 | - | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 179 | 1521060 | 1521359 | - | NZ_CP043661.1 | Kribbella qitaiheensis |
| 180 | 3994250 | 3994546 | - | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 181 | 1705597 | 1705893 | - | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 182 | 1012251 | 1012568 | + | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 183 | 3279791 | 3280063 | + | NZ_CP019607.1 | Tessaracoccus flavescens |
| 184 | 6153612 | 6153854 | - | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 185 | 9628468 | 9628767 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 186 | 5280434 | 5280733 | - | NC_013729.1 | Kribbella flavida DSM 17836 |
| 187 | 1793464 | 1793706 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 188 | 1235537 | 1235836 | + | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 189 | 31450 | 31749 | - | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 190 | 2687250 | 2687546 | - | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 191 | 1822098 | 1822373 | + | NZ_CP018762.1 | Microbacterium aurum |
| 192 | 57209 | 57505 | + | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 193 | 2838709 | 2838948 | - | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 194 | 1845909 | 1846208 | - | NZ_CP058670.1 | Chryseoglobus indicus |
| 195 | 1720074 | 1720373 | - | NZ_CP031423.1 | Microbacterium lemovicicum |
| 196 | 1723608 | 1723907 | + | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 197 | 1328990 | 1329286 | - | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 198 | 4354386 | 4354628 | - | NC_007777.1 | Frankia casuarinae |
| 199 | 3621164 | 3621463 | - | NZ_CP035494.1 | Microbacterium protaetiae |
| 200 | 5663635 | 5663958 | - | NZ_AP018920.1 | Pseudonocardia autotrophica |
| 201 | 554924 | 555220 | + | NZ_CP007490.1 | Rhodoluna lacicola |
| 202 | 2962443 | 2962742 | + | NZ_CP061344.1 | Microbacterium hominis |
| 203 | 3174461 | 3174736 | - | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 204 | 1832964 | 1833266 | - | NZ_CP028913.1 | Agromyces badenianii |
| 205 | 1893625 | 1893948 | + | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 206 | 2133075 | 2133374 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 207 | 4339808 | 4340104 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 208 | 949244 | 949540 | + | NZ_CP013290.1 | Janibacter indicus |
| 209 | 713157 | 713453 | + | NZ_CP040887.1 | Serinicoccus chungangensis |
| 210 | 2362276 | 2362521 | + | NZ_LT996886.1 | Tessaracoccus timonensis |
| 211 | 1226853 | 1227107 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 212 | 2599762 | 2600058 | - | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 213 | 2997842 | 2998144 | + | NZ_CP053564.1 | Pseudonocardia broussonetiae |
| 214 | 1996679 | 1996981 | + | NZ_CP013979.1 | Agromyces aureus |
| 215 | 1576297 | 1576593 | + | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 216 | 791295 | 791591 | - | NZ_LT635457.1 | Actinomyces pacaensis |
| 217 | 4908776 | 4909033 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 218 | 2014885 | 2015160 | - | NZ_CP031422.1 | Microbacterium oxydans |
| 219 | 240194 | 240493 | + | NZ_CP049253.1 | Microbacterium amylolyticum |
| 220 | 1691143 | 1691403 | + | NZ_CP031425.1 | Microbacterium foliorum |
| 221 | 72871 | 73176 | + | NZ_CP035810.1 | Brevibacterium luteolum |
| 222 | 1295836 | 1296135 | + | NZ_CP038256.1 | Microbacterium sediminis |
| 223 | 2053130 | 2053429 | - | NZ_CP044232.1 | Microbacterium lushaniae |
| 224 | 529510 | 529809 | - | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 225 | 703627 | 703923 | + | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 226 | 1852713 | 1853009 | - | NZ_LS483423.1 | Jonesia denitrificans |
| 227 | 8747016 | 8747315 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 228 | 1466374 | 1466673 | + | NZ_CP044231.1 | Microbacterium caowuchunii |
| 229 | 2413383 | 2413685 | + | NZ_CP035491.1 | Agromyces protaetiae |
| 230 | 2487802 | 2488110 | - | NZ_CP026952.1 | Aeromicrobium chenweiae |
| 231 | 9347577 | 9347876 | - | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 232 | 875240 | 875536 | - | NZ_CP040508.1 | Rhodoluna limnophila |
| 233 | 2095676 | 2095975 | - | NZ_CP038266.1 | Microbacterium wangchenii |
| 234 | 758295 | 758591 | + | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 235 | 1268287 | 1268535 | + | NC_014666.1 | Frankia inefficax |
| 236 | 1248553 | 1248849 | + | NC_014151.1 | Cellulomonas flavigena DSM 20109 |
| 237 | 3562445 | 3562744 | - | NZ_CP027793.1 | Rhodococcus hoagii |
| 238 | 610419 | 610718 | + | NZ_CP026923.1 | Pontimonas salivibrio |
| 239 | 2714105 | 2714404 | - | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 240 | 8895713 | 8896012 | - | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 241 | 3431366 | 3431689 | - | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 242 | 1611618 | 1611911 | + | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 243 | 3537240 | 3537539 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 244 | 2525914 | 2526213 | + | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 245 | 3474705 | 3475016 | - | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 246 | 1055333 | 1055629 | - | NZ_CP066065.1 | Schaalia meyeri |
| 247 | 2149760 | 2150014 | + | NZ_AP023396.1 | Nocardia wallacei |
| 248 | 4413099 | 4413398 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 249 | 2647964 | 2648263 | - | NC_015671.1 | Cellulomonas gilvus ATCC 13127 |
| 250 | 3511914 | 3512153 | - | NZ_CP065682.1 | Brevibacterium casei |
| 251 | 2602290 | 2602589 | - | NZ_CP033325.1 | Georgenia faecalis |
| 252 | 2455296 | 2455595 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 253 | 1031487 | 1031786 | - | NZ_CP032788.1 | Corynebacterium xerosis |
| 254 | 3758874 | 3759131 | - | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 255 | 3417058 | 3417315 | - | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 256 | 2496041 | 2496298 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 257 | 2654609 | 2654857 | + | NZ_CP059694.1 | Gordonia rubripertincta |
| 258 | 3042993 | 3043292 | - | NC_015514.1 | Cellulomonas fimi ATCC 484 |
| 259 | 4976774 | 4977013 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 260 | 3287400 | 3287657 | - | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 261 | 5017977 | 5018225 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 262 | 2219742 | 2220017 | + | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 263 | 5849862 | 5850101 | - | NZ_LR134352.1 | Nocardia asteroides |
| 264 | 2202695 | 2202994 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 265 | 1383078 | 1383326 | + | NZ_CP016353.1 | Prauserella marina |
| 266 | 2166111 | 2166353 | + | NZ_AP017900.1 | Nocardia seriolae |
| 267 | 1003263 | 1003523 | + | NZ_CP060789.1 | Tessaracoccus defluvii |
| 268 | 3114906 | 3115217 | - | NZ_CP027433.1 | Gordonia iterans |
| 269 | 1212453 | 1212752 | - | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 270 | 6344131 | 6344373 | - | NC_008278.1 | Frankia alni ACN14a |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP018863.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01425.23 | 1.0 | 269 | 3 | same-strand | Amidase |
| 2 | PF02934.17 | 0.91 | 247 | 1600 | same-strand | GatB/GatE catalytic domain |
| 3 | PF02637.20 | 0.91 | 247 | 1602 | same-strand | GatB domain |
| 4 | PF01653.20 | 0.67 | 181 | 2695 | same-strand | NAD-dependent DNA ligase adenylation domain |
| 5 | PF03120.18 | 0.75 | 203 | 2694 | same-strand | NAD-dependent DNA ligase OB-fold domain |
| 6 | PF12826.9 | 0.74 | 199 | 2695 | same-strand | Helix-hairpin-helix motif |
| 7 | PF00533.28 | 0.75 | 203 | 2694 | same-strand | BRCA1 C Terminus (BRCT) domain |
| 8 | PF03119.18 | 0.75 | 203 | 2694 | same-strand | NAD-dependent DNA ligase C4 zinc finger domain |
| 9 | PF14520.8 | 0.71 | 191 | 2696 | same-strand | Helix-hairpin-helix domain |
++ More..