* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT635772.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF08534.12
|
1.0
|
3
|
559.5
|
same-strand
|
Redoxin
|
2
|
PF00578.23
|
1.0
|
3
|
559.5
|
same-strand
|
AhpC/TSA family
|
3
|
PF13905.8
|
1.0
|
3
|
263
|
same-strand
|
Thioredoxin-like
|
4
|
PF12838.9
|
1.0
|
3
|
94.0
|
same-strand
|
4Fe-4S dicluster domain
|
5
|
PF13187.8
|
0.67
|
2
|
183
|
same-strand
|
4Fe-4S dicluster domain
|
6
|
PF13237.8
|
0.67
|
2
|
2570.0
|
both-strands
|
4Fe-4S dicluster domain
|
7
|
PF02518.28
|
0.67
|
2
|
899.0
|
same-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
8
|
PF00512.27
|
0.67
|
2
|
899.0
|
same-strand
|
His Kinase A (phospho-acceptor) domain
|
9
|
PF00072.26
|
0.67
|
2
|
1120.5
|
same-strand
|
Response regulator receiver domain
|
10
|
PF00486.30
|
0.67
|
2
|
1120.5
|
same-strand
|
Transcriptional regulatory protein, C terminal
|
++ More..