* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13616.8
|
0.9
|
9
|
3139
|
opposite-strand
|
PPIC-type PPIASE domain
|
2
|
PF00639.23
|
0.9
|
9
|
3139
|
opposite-strand
|
PPIC-type PPIASE domain
|
3
|
PF13145.8
|
0.9
|
9
|
3139
|
opposite-strand
|
PPIC-type PPIASE domain
|
4
|
PF11667.10
|
1.0
|
10
|
1820.0
|
opposite-strand
|
Putative zincin peptidase
|
5
|
PF08963.12
|
1.0
|
10
|
1270.5
|
same-strand
|
Protein of unknown function (DUF1878)
|
6
|
PF01047.24
|
1.0
|
10
|
663.5
|
opposite-strand
|
MarR family
|
7
|
PF13463.8
|
1.0
|
10
|
663.5
|
opposite-strand
|
Winged helix DNA-binding domain
|
8
|
PF12732.9
|
1.0
|
10
|
118.0
|
opposite-strand
|
YtxH-like protein
|
9
|
PF06013.14
|
0.9
|
9
|
118
|
opposite-strand
|
Proteins of 100 residues with WXG
|
10
|
PF17099.7
|
1.0
|
10
|
74.0
|
opposite-strand
|
Tryptophan transporter TrpP
|
11
|
PF00266.21
|
1.0
|
10
|
716.0
|
opposite-strand
|
Aminotransferase class-V
|
12
|
PF01230.25
|
1.0
|
10
|
1940.5
|
opposite-strand
|
HIT domain
|
13
|
PF11969.10
|
1.0
|
10
|
1940.5
|
opposite-strand
|
Scavenger mRNA decapping enzyme C-term binding
|
14
|
PF00005.29
|
1.0
|
10
|
2865.0
|
same-strand
|
ABC transporter
|
15
|
PF05975.14
|
1.0
|
10
|
3601.0
|
same-strand
|
Bacterial ABC transporter protein EcsB
|
++ More..