Result : EXP03861
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP03861 |
| NCBI Accession ID | |
| Organism | Ruminococcus,Hungatella |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGAAATCACATAAATATTGGTCTAGCAGTGCAATCAATATCCTTCAGACACTGGTCGTTGCAATCGGTGCCGGACTTGGTGTCTGGGGCGTAATCAACCTGATGGAAGGTTATGGAAACGACAACCCGGGTGCAAATGCTCATGGTTAA |
| Sequence | MKSHKYWSSSAINILQTLVVAIGAGLGVWGVINLMEGYGNDNPGANAHG |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 49 |
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| Conservation Analysis |
No. of Species: 20
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 86697 | 86837 | + | NZ_CP030280.1 | Blautia argi |
| 2 | 2261220 | 2261372 | - | NZ_LR699011.1 | Roseburia hominis |
| 3 | 369466 | 369606 | + | NZ_LR699011.1 | Roseburia hominis |
| 4 | 3314019 | 3314177 | - | NZ_LR699011.1 | Roseburia hominis |
| 5 | 474620 | 474760 | + | NZ_CP029487.1 | Eubacterium maltosivorans |
| 6 | 3497648 | 3497788 | - | NZ_CP029487.1 | Eubacterium maltosivorans |
| 7 | 3418188 | 3418328 | + | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 8 | 1598999 | 1599139 | + | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 9 | 37285 | 37425 | + | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 10 | 2434344 | 2434484 | - | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 11 | 1924374 | 1924526 | - | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 12 | 1861879 | 1862019 | + | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 13 | 2254720 | 2254860 | + | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 14 | 102418 | 102558 | - | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 15 | 1977531 | 1977683 | - | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 16 | 6476502 | 6476642 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 17 | 1635457 | 1635597 | - | NZ_CP009240.1 | Megasphaera elsdenii 14-14 |
| 18 | 744773 | 744913 | - | NZ_LT990039.1 | Massilistercora timonensis |
| 19 | 1098567 | 1098707 | - | NZ_LT990039.1 | Massilistercora timonensis |
| 20 | 1557365 | 1557505 | + | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 21 | 1430018 | 1430158 | + | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 22 | 2234876 | 2235016 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 23 | 2790844 | 2790981 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 24 | 992299 | 992439 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 25 | 2285496 | 2285636 | + | NZ_CP034413.2 | Dysosmobacter welbionis |
| 26 | 2444028 | 2444159 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 27 | 1255927 | 1256085 | + | NZ_CP028107.1 | Fusobacterium necrophorum subsp. funduliforme |
| 28 | 1446883 | 1447041 | - | NZ_LT635480.1 | Ndongobacter massiliensis |
| 29 | 2756734 | 2756892 | + | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 30 | 750178 | 750336 | + | NZ_AP022822.1 | Enterococcus saigonensis |
| 31 | 1496451 | 1496591 | - | NZ_CP029256.1 | Christensenella minuta |
| 32 | 946101 | 946259 | - | NZ_CP027226.1 | Fastidiosipila sanguinis |
| 33 | 1747270 | 1747428 | - | NZ_LT635772.1 | Anaerococcus mediterraneensis |
| 34 | 591555 | 591713 | - | NZ_LT635772.1 | Anaerococcus mediterraneensis |
| 35 | 742348 | 742479 | - | NZ_CP039126.1 | Blautia producta |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR699011.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12696.9 | 0.8 | 16 | 217 | same-strand | TraM recognition site of TraD and TraG |
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