Result : EXP03817
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP03817 |
| NCBI Accession ID | |
| Organism | Selenomonas,Oscillibacter,Clostridium,Centipeda |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | ATGTCGATGGGACTCATTCCGGGAACGAAGGTGACGGTTCTGCGCTCAGCCCCCATGGGGGATCCGATCGCGATTGGCATTCGCTCGTACAATCTCGCGCTGCGCCGTGAGGATGCAGCACTTATATCCGTCGAGCAGGTCGGTTAG |
| Sequence | MSMGLIPGTKVTVLRSAPMGDPIAIGIRSYNLALRREDAALISVEQVG |
| Source of smORF | Metagenomic Ribo-seq |
| Function | |
| Pubmed ID | 32601270 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 48 |
++ More..
| Conservation Analysis |
No. of Species: 136
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 638810 | 638971 | + | NC_015437.1 | Selenomonas sputigena ATCC 35185 |
| 2 | 902279 | 902425 | - | NZ_LT906446.1 | Megamonas hypermegale |
| 3 | 510885 | 511028 | + | NZ_LR699119.1 | Aquicella siphonis |
| 4 | 128659 | 128796 | + | NZ_AP019309.1 | Intestinibaculum porci |
| 5 | 2887276 | 2887425 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 6 | 1686129 | 1686269 | - | NZ_LR699114.1 | Aquicella lusitana |
| 7 | 1823604 | 1823747 | - | NZ_CP007445.1 | Gilliamella apicola |
| 8 | 1529119 | 1529271 | + | NC_007796.1 | Methanospirillum hungatei JF-1 |
| 9 | 4447521 | 4447658 | - | NZ_AP021874.1 | Desulfosarcina alkanivorans |
| 10 | 1864244 | 1864384 | - | NZ_CP048878.1 | Spartinivicinus ruber |
| 11 | 1506974 | 1507096 | + | NZ_LR699011.1 | Roseburia hominis |
| 12 | 1060594 | 1060737 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 13 | 2167851 | 2167997 | + | NZ_CP023344.1 | Nibricoccus aquaticus |
| 14 | 2618808 | 2618945 | + | NZ_CP029331.1 | Thauera hydrothermalis |
| 15 | 1521471 | 1521623 | + | NZ_CP008887.1 | Thermococcus eurythermalis |
| 16 | 1904052 | 1904198 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 17 | 354094 | 354249 | + | NZ_LR134524.1 | Peptoniphilus harei |
| 18 | 769227 | 769367 | + | NC_012785.1 | Kosmotoga olearia TBF 19.5.1 |
| 19 | 3694339 | 3694476 | - | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 20 | 205879 | 206010 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 21 | 568867 | 569004 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 22 | 2908545 | 2908685 | - | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 23 | 37121 | 37240 | + | NZ_CP034413.2 | Dysosmobacter welbionis |
| 24 | 1457703 | 1457834 | + | NZ_CP041335.1 | Chitinolyticbacter meiyuanensis |
| 25 | 2633794 | 2633943 | - | NZ_CP060720.1 | Vagococcus carniphilus |
| 26 | 2267555 | 2267692 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 27 | 1701291 | 1701428 | - | NC_015389.1 | Coriobacterium glomerans PW2 |
| 28 | 1237586 | 1237723 | + | NZ_CP040846.1 | Thermococcus indicus |
| 29 | 664586 | 664729 | + | NZ_LN734822.1 | Methanobacterium formicicum |
| 30 | 2602553 | 2602705 | + | NC_014098.1 | Kyrpidia tusciae DSM 2912 |
| 31 | 2995412 | 2995555 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 32 | 13575 | 13721 | + | NZ_CP027228.1 | Mogibacterium diversum |
| 33 | 2640636 | 2640782 | + | NZ_CP019342.1 | Nonlabens tegetincola |
| 34 | 2818463 | 2818606 | - | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 35 | 1071010 | 1071147 | - | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 36 | 4087570 | 4087716 | - | NZ_AP023213.1 | Citrifermentans bremense |
| 37 | 1076734 | 1076874 | - | NC_010571.1 | Opitutus terrae PB90-1 |
| 38 | 4189469 | 4189615 | - | NC_011146.1 | Citrifermentans bemidjiense Bem |
| 39 | 3530290 | 3530427 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 40 | 2620435 | 2620575 | + | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 41 | 2924805 | 2924942 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 42 | 1050322 | 1050477 | + | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 43 | 1260510 | 1260647 | - | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 44 | 2944315 | 2944458 | - | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 45 | 115492 | 115623 | - | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 46 | 2262356 | 2262514 | - | NZ_CP021850.1 | Pseudoclostridium thermosuccinogenes |
| 47 | 4349878 | 4350015 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 48 | 4362226 | 4362363 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 49 | 2937331 | 2937468 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 50 | 4467976 | 4468113 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 51 | 4698068 | 4698205 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 52 | 5521486 | 5521623 | + | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 53 | 1268963 | 1269133 | + | NC_014011.1 | Aminobacterium colombiense DSM 12261 |
| 54 | 582766 | 582909 | - | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 55 | 2562617 | 2562769 | + | NZ_CP024955.1 | Kyrpidia spormannii |
| 56 | 410124 | 410261 | + | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
| 57 | 1371058 | 1371198 | - | NC_020156.1 | Nonlabens dokdonensis DSW-6 |
| 58 | 1513218 | 1513352 | + | NZ_CP053416.1 | Salmonella bongori |
| 59 | 3663994 | 3664128 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 60 | 1731961 | 1732092 | + | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 61 | 1368913 | 1369053 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 62 | 2182712 | 2182849 | + | NZ_CP032416.1 | Clostridium fermenticellae |
| 63 | 113880 | 114020 | + | NZ_CP066014.1 | Anaerococcus vaginalis |
| 64 | 5066357 | 5066506 | - | NZ_CP011125.1 | Sandaracinus amylolyticus |
| 65 | 890379 | 890504 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 66 | 2107176 | 2107319 | + | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 67 | 539911 | 540048 | + | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 68 | 729325 | 729465 | + | NZ_CP067016.1 | Anaerococcus obesiensis |
| 69 | 2449505 | 2449642 | - | NC_019903.1 | Desulfitobacterium dichloroeliminans LMG P-21439 |
| 70 | 100739 | 100891 | + | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 71 | 1424145 | 1424306 | - | NZ_CP012805.1 | Streptococcus anginosus |
| 72 | 2213093 | 2213239 | - | NZ_CP042434.1 | Arachidicoccus ginsenosidivorans |
| 73 | 94730 | 94882 | + | NZ_CP061202.1 | Rhodobacter capsulatus |
| 74 | 3126928 | 3127065 | - | NC_013720.1 | Pirellula staleyi DSM 6068 |
| 75 | 3498352 | 3498495 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 76 | 688414 | 688566 | - | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 77 | 510372 | 510515 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 78 | 2827036 | 2827179 | - | NZ_CP040990.1 | Vibrio furnissii |
| 79 | 2163312 | 2163455 | + | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 80 | 3537033 | 3537158 | + | NZ_CP020470.1 | Rhodobacter blasticus |
| 81 | 398896 | 399036 | + | NZ_CP014223.1 | Anaerotignum propionicum DSM 1682 |
| 82 | 1726652 | 1726804 | + | NZ_CP021255.1 | Desulfobulbus oralis |
| 83 | 7218162 | 7218287 | - | NZ_CP036433.1 | Lignipirellula cremea |
| 84 | 246213 | 246353 | + | NZ_AP019711.1 | Amedibacterium intestinale |
| 85 | 192172 | 192315 | + | NC_017455.1 | Halanaerobium praevalens DSM 2228 |
| 86 | 1011615 | 1011755 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 87 | 294862 | 294993 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 88 | 2766455 | 2766598 | - | NC_013456.1 | Vibrio antiquarius |
| 89 | 1520536 | 1520673 | + | NC_014833.1 | Ruminococcus albus 7 = DSM 20455 |
| 90 | 2371372 | 2371515 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 91 | 4887279 | 4887419 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 92 | 543672 | 543833 | + | NZ_CP039457.1 | Streptococcus pasteurianus |
| 93 | 1662305 | 1662454 | - | NZ_CP029491.1 | Streptococcus sobrinus |
| 94 | 1415997 | 1416158 | + | NZ_CP054015.1 | Streptococcus gallolyticus |
| 95 | 1364601 | 1364762 | - | NZ_CP034543.1 | Streptococcus periodonticum |
| 96 | 493188 | 493349 | + | NZ_LS483403.1 | Streptococcus lutetiensis |
| 97 | 1966963 | 1967106 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 98 | 1653006 | 1653143 | - | NC_008593.1 | Clostridium novyi NT |
| 99 | 870689 | 870835 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 100 | 5046302 | 5046442 | - | NZ_CP054139.1 | Mucilaginibacter mali |
| 101 | 1487763 | 1487924 | - | NZ_LT906439.1 | Streptococcus merionis |
| 102 | 4912465 | 4912602 | + | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 103 | 3586462 | 3586599 | - | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 104 | 654316 | 654453 | + | NC_013385.1 | Ammonifex degensii KC4 |
| 105 | 3365163 | 3365300 | + | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 106 | 501176 | 501340 | + | NZ_LS483343.1 | Streptococcus ferus |
| 107 | 4446136 | 4446273 | + | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 108 | 2445565 | 2445708 | - | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 109 | 850710 | 850853 | + | NZ_CP030788.1 | Vibrio campbellii |
| 110 | 1096736 | 1096879 | + | NZ_CP009467.1 | Vibrio harveyi |
| 111 | 932164 | 932307 | - | NZ_CP019959.1 | Vibrio owensii |
| 112 | 1340970 | 1341113 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 113 | 1725205 | 1725342 | + | NZ_CP040021.1 | Salinivibrio kushneri |
| 114 | 5955518 | 5955655 | - | NZ_CP032869.1 | Mucilaginibacter celer |
| 115 | 68718 | 68849 | - | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 116 | 2250723 | 2250866 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 117 | 2248780 | 2248923 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 118 | 2990003 | 2990149 | - | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 119 | 987683 | 987826 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 120 | 983381 | 983524 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 121 | 3959496 | 3959633 | - | NZ_CP024091.1 | Pedobacter ginsengisoli |
| 122 | 196911 | 197060 | - | NZ_CP014056.2 | Grimontia hollisae |
| 123 | 962346 | 962483 | + | NZ_LR590481.1 | Hathewaya histolytica |
| 124 | 7827803 | 7827955 | - | NC_016609.1 | Niastella koreensis GR20-10 |
| 125 | 784165 | 784299 | + | NZ_CP014204.2 | Clostridium baratii |
| 126 | 3073342 | 3073479 | + | NC_008554.1 | Syntrophobacter fumaroxidans MPOB |
| 127 | 1110610 | 1110765 | + | NC_015436.1 | Sphaerochaeta coccoides DSM 17374 |
| 128 | 4137432 | 4137563 | - | NZ_CP034120.1 | Glaciecola amylolytica |
| 129 | 2229284 | 2229427 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 130 | 2812425 | 2812562 | - | NC_014624.2 | Eubacterium callanderi |
| 131 | 1535571 | 1535708 | - | NZ_CP029487.1 | Eubacterium maltosivorans |
| 132 | 3047502 | 3047639 | + | NZ_CP019962.1 | Eubacterium limosum |
| 133 | 3700192 | 3700332 | + | NZ_CP042433.1 | Flavisolibacter ginsenosidimutans |
| 134 | 1680269 | 1680406 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 135 | 6587754 | 6587885 | + | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 136 | 2743720 | 2743851 | + | NC_008576.1 | Magnetococcus marinus MC-1 |
| 137 | 953568 | 953687 | + | NZ_CP009687.1 | Clostridium aceticum |
| 138 | 3179797 | 3179931 | + | NZ_CP047897.1 | Nibribacter ruber |
| 139 | 2346205 | 2346348 | + | NC_018664.1 | Gottschalkia acidurici 9a |
| 140 | 935625 | 935774 | + | NZ_AP021884.1 | Sulfuriferula plumbiphila |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR699119.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02421.20 | 0.96 | 131 | 6 | same-strand | Ferrous iron transport protein B |
| 2 | PF07670.16 | 0.96 | 131 | 6 | same-strand | Nucleoside recognition |
| 3 | PF07664.14 | 0.96 | 131 | 6 | same-strand | Ferrous iron transport protein B C terminus |
| 4 | PF01926.25 | 0.93 | 126 | 7.5 | same-strand | 50S ribosome-binding GTPase |
| 5 | PF17910.3 | 0.69 | 94 | 0 | same-strand | FeoB cytosolic helical domain |
++ More..