* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048852.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00180.22
|
0.78
|
7
|
1854
|
opposite-strand
|
Isocitrate/isopropylmalate dehydrogenase
|
2
|
PF10502.11
|
0.67
|
6
|
1168.0
|
opposite-strand
|
Signal peptidase, peptidase S26
|
3
|
PF07977.15
|
1.0
|
9
|
36
|
opposite-strand
|
FabA-like domain
|
4
|
PF05116.15
|
1.0
|
9
|
133
|
opposite-strand
|
Sucrose-6F-phosphate phosphohydrolase
|
5
|
PF03746.18
|
1.0
|
9
|
1087
|
opposite-strand
|
LamB/YcsF family
|
6
|
PF01566.20
|
1.0
|
9
|
1873
|
opposite-strand
|
Natural resistance-associated macrophage protein
|
7
|
PF07286.14
|
1.0
|
9
|
3093
|
opposite-strand
|
Protein of unknown function (DUF1445)
|
8
|
PF02682.18
|
0.89
|
8
|
3929.5
|
opposite-strand
|
Carboxyltransferase domain, subdomain C and D
|
9
|
PF08125.15
|
0.67
|
6
|
2286.5
|
opposite-strand
|
Mannitol dehydrogenase C-terminal domain
|
10
|
PF01232.25
|
0.67
|
6
|
2286.5
|
opposite-strand
|
Mannitol dehydrogenase Rossmann domain
|
++ More..