Result : A1KU22
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0250 protein NMC1112 |
| NCBI Accession ID | AM421808.1 |
| Organism | Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) |
| Left | 1093608 |
| Right | 1093883 |
| Strand | - |
| Nucleotide Sequence | ATGACCGAACAAAAAAACAAAACATCCCTCATCGAATTTCCCTGCACCTTCCCATTGAAAGTAATGGGCGCGGTGCATCCCGAGTTCGAGCAGGCGGTATTGGACACCGTCCGCCTCCACGCCCCCGACACGCAGGCGCACCACATCACCACGCGTCCGAGCAGCAAAGGCAACTATACCGGCGCCACCGTACAAGTAAAGGTTGAAAACCAAGAACAACTTGACAATATCTACCGCGCGCTGACTTCGCACAAATTGGTCAAAGTGGTACTTTGA |
| Sequence | MTEQKNKTSLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDTQAHHITTRPSSKGNYTGATVQVKVENQEQLDNIYRALTSHKLVKVVL |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01102. Profile Description: Protein of unknown function (DUF493). hypothetical protein; Provisional |
| Pubmed ID | 17305430 |
| Domain | CDD:412741 |
| Functional Category | Others |
| Uniprot ID | A1KU22 |
| ORF Length (Amino Acid) | 91 |
++ More..
| Conservation Analysis |
No. of Species: 99
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 765420 | 765695 | - | NZ_CP021520.1 | Neisseria meningitidis |
| 2 | 2079381 | 2079656 | - | NZ_CP012028.1 | Neisseria gonorrhoeae |
| 3 | 1963959 | 1964234 | - | NZ_CP031325.1 | Neisseria polysaccharea |
| 4 | 844137 | 844412 | - | NZ_CP031253.1 | Neisseria lactamica |
| 5 | 715324 | 715599 | + | NZ_LS483369.1 | Neisseria cinerea |
| 6 | 933818 | 934093 | + | NZ_CP039887.1 | Neisseria subflava |
| 7 | 855690 | 855965 | + | NZ_CP039886.1 | Neisseria flavescens |
| 8 | 98160 | 98429 | + | NZ_CP031699.1 | Neisseria animalis |
| 9 | 111027 | 111296 | + | NZ_CP022278.1 | Neisseria chenwenguii |
| 10 | 893831 | 894079 | - | NZ_LR134516.1 | Neisseria animaloris |
| 11 | 265786 | 266055 | + | NZ_LR134533.1 | Neisseria weaveri |
| 12 | 1781636 | 1781908 | + | NZ_LT906434.1 | Neisseria zoodegmatis |
| 13 | 1020707 | 1020973 | + | NZ_CP072524.1 | Neisseria sicca |
| 14 | 1845755 | 1846024 | + | NZ_CP031700.1 | Neisseria zalophi |
| 15 | 483516 | 483788 | + | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 16 | 1409652 | 1409921 | + | NZ_CP059571.1 | Neisseria bacilliformis |
| 17 | 2483073 | 2483360 | - | NZ_CP046027.1 | Neisseria brasiliensis |
| 18 | 2117459 | 2117680 | + | NZ_CP059565.1 | Neisseria wadsworthii |
| 19 | 1721944 | 1722213 | + | NZ_LR134313.1 | Neisseria canis |
| 20 | 1512091 | 1512360 | - | NZ_CP059567.1 | Neisseria shayeganii |
| 21 | 1001212 | 1001484 | + | NZ_CP060414.1 | Neisseria musculi |
| 22 | 294793 | 295059 | - | NZ_CP059569.1 | Kingella oralis |
| 23 | 1930418 | 1930690 | - | NZ_LT906482.1 | Eikenella corrodens |
| 24 | 508416 | 508685 | + | NZ_CP031252.1 | Neisseria elongata |
| 25 | 1068734 | 1069006 | + | NZ_CP038018.1 | Eikenella exigua |
| 26 | 1043245 | 1043514 | + | NZ_CP019448.1 | Simonsiella muelleri ATCC 29453 |
| 27 | 646879 | 647148 | - | NZ_CP059563.1 | Conchiformibius steedae |
| 28 | 510805 | 511080 | - | NZ_AP021881.1 | Sulfuriferula nivalis |
| 29 | 830106 | 830327 | - | NZ_CP059564.1 | Alysiella filiformis |
| 30 | 237327 | 237608 | + | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 31 | 299775 | 300023 | + | NZ_CP024941.1 | Paraburkholderia terricola |
| 32 | 967807 | 968115 | - | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 33 | 3281876 | 3282184 | - | NZ_CP013450.1 | Burkholderia cenocepacia |
| 34 | 3358820 | 3359101 | - | NZ_CP045235.1 | Burkholderia cepacia |
| 35 | 3392010 | 3392291 | - | NC_007510.1 | Burkholderia lata |
| 36 | 3210395 | 3210676 | - | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 37 | 3409064 | 3409372 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 38 | 3594223 | 3594531 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 39 | 552327 | 552587 | + | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 40 | 246093 | 246380 | + | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 41 | 261534 | 261782 | + | NZ_CP026111.1 | Paraburkholderia terrae |
| 42 | 424560 | 424868 | + | NC_007651.1 | Burkholderia thailandensis E264 |
| 43 | 3208877 | 3209158 | - | NZ_CP013398.1 | Burkholderia seminalis |
| 44 | 3374320 | 3374628 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 45 | 214716 | 215015 | + | NZ_CP049134.1 | Paraburkholderia tropica |
| 46 | 3259125 | 3259406 | - | NZ_CP013401.1 | Burkholderia metallica |
| 47 | 764481 | 764789 | + | NZ_CP009727.1 | Burkholderia mallei |
| 48 | 1317832 | 1318140 | - | NZ_CP008781.1 | Burkholderia pseudomallei |
| 49 | 1320717 | 1321025 | - | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 50 | 908088 | 908348 | - | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 51 | 103403 | 103705 | + | NZ_CP009238.1 | Basilea psittacipulmonis DSM 24701 |
| 52 | 340708 | 340977 | + | NZ_CP024934.1 | Paraburkholderia graminis |
| 53 | 250774 | 251067 | + | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 54 | 241244 | 241543 | + | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 55 | 2585845 | 2586117 | - | NZ_CP059560.1 | Aromatoleum petrolei |
| 56 | 3888852 | 3889160 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 57 | 1801119 | 1801367 | - | NZ_CP015958.1 | Paraburkholderia caribensis |
| 58 | 1987961 | 1988269 | - | NZ_CP035900.1 | Burkholderia glumae |
| 59 | 2462182 | 2462430 | + | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 60 | 281293 | 281553 | + | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 61 | 117674 | 117937 | - | NZ_AP021884.1 | Sulfuriferula plumbiphila |
| 62 | 2568340 | 2568585 | - | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 63 | 236326 | 236574 | + | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 64 | 2321345 | 2321614 | - | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 65 | 1818814 | 1819086 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 66 | 1545026 | 1545292 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 67 | 2573164 | 2573433 | - | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 68 | 539677 | 539949 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 69 | 1411312 | 1411587 | + | NZ_CP034464.1 | Undibacterium parvum |
| 70 | 166089 | 166373 | + | NZ_CP028339.1 | Thauera aromatica K172 |
| 71 | 5316899 | 5317186 | - | NZ_CP013232.1 | Collimonas fungivorans |
| 72 | 1964282 | 1964560 | + | NZ_CP047241.1 | Aquitalea denitrificans |
| 73 | 3527498 | 3527776 | - | NZ_CP039731.1 | Aquitalea aquatilis |
| 74 | 501683 | 501952 | + | NZ_CP011253.3 | Pandoraea oxalativorans |
| 75 | 252790 | 253092 | - | NZ_CP016022.1 | Ralstonia insidiosa |
| 76 | 2935696 | 2935974 | - | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 77 | 2198359 | 2198658 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 78 | 243988 | 244236 | + | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 79 | 266059 | 266367 | + | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 80 | 4485079 | 4485309 | - | NZ_CP013235.1 | Collimonas arenae |
| 81 | 2674228 | 2674494 | + | NC_012969.1 | Methylovorus glucosetrophus SIP3-4 |
| 82 | 506761 | 507030 | + | NZ_LT906435.1 | Pandoraea sputorum |
| 83 | 321172 | 321477 | + | NZ_CP039287.1 | Cupriavidus necator H16 |
| 84 | 535418 | 535690 | + | NZ_CP010897.2 | Pandoraea vervacti |
| 85 | 5321116 | 5321403 | - | NZ_CP013236.1 | Collimonas pratensis |
| 86 | 296027 | 296335 | - | NZ_CP027792.1 | Pulveribacter suum |
| 87 | 433148 | 433453 | - | NZ_CP062803.1 | Cupriavidus basilensis |
| 88 | 160692 | 160976 | + | NZ_CP018839.1 | Thauera chlorobenzoica |
| 89 | 1712537 | 1712785 | + | NZ_CP047165.1 | Pelistega ratti |
| 90 | 610151 | 610435 | + | NZ_AP022345.1 | Fluviibacter phosphoraccumulans |
| 91 | 2937481 | 2937729 | + | NZ_CP016278.1 | Diaphorobacter polyhydroxybutyrativorans |
| 92 | 2968129 | 2968410 | - | NZ_CP014646.1 | Thauera humireducens |
| 93 | 355621 | 355890 | + | NZ_CP029210.1 | Aquabacterium olei |
| 94 | 11976 | 12245 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 95 | 2077601 | 2077849 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 96 | 404583 | 404879 | - | NZ_CP051298.1 | Alicycliphilus denitrificans |
| 97 | 181278 | 181589 | + | NZ_CP043575.1 | Comamonas koreensis |
| 98 | 670971 | 671249 | - | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 99 | 727568 | 727837 | - | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP021881.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04055.23 | 0.92 | 91 | 1560 | same-strand | Radical SAM superfamily |
| 2 | PF00768.22 | 0.63 | 62 | 955.5 | same-strand | D-alanyl-D-alanine carboxypeptidase |
| 3 | PF07943.15 | 0.63 | 62 | 955.5 | same-strand | Penicillin-binding protein 5, C-terminal domain |
++ More..