* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014720.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF09515.12
|
0.67
|
2
|
4015.0
|
same-strand
|
Thiamine transporter protein (Thia YuaJ)
|
2
|
PF00709.23
|
1.0
|
3
|
2580
|
opposite-strand
|
Adenylosuccinate synthetase
|
3
|
PF00664.25
|
1.0
|
3
|
305.0
|
opposite-strand
|
ABC transporter transmembrane region
|
4
|
PF00005.29
|
1.0
|
3
|
672
|
opposite-strand
|
ABC transporter
|
5
|
PF02463.21
|
1.0
|
3
|
673
|
opposite-strand
|
RecF/RecN/SMC N terminal domain
|
6
|
PF01944.19
|
1.0
|
3
|
1538
|
same-strand
|
Stage II sporulation protein M
|
7
|
PF13483.8
|
1.0
|
3
|
2287
|
opposite-strand
|
Beta-lactamase superfamily domain
|
8
|
PF04932.17
|
1.0
|
3
|
3571.5
|
opposite-strand
|
O-Antigen ligase
|
9
|
PF13181.8
|
1.0
|
3
|
2935
|
opposite-strand
|
Tetratricopeptide repeat
|
10
|
PF13439.8
|
0.67
|
2
|
5822.0
|
opposite-strand
|
Glycosyltransferase Family 4
|
++ More..