* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR699004.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01926.25
|
1.0
|
2
|
2426.5
|
same-strand
|
50S ribosome-binding GTPase
|
2
|
PF02421.20
|
1.0
|
2
|
2426.5
|
same-strand
|
Ferrous iron transport protein B
|
3
|
PF14714.8
|
1.0
|
2
|
2884.5
|
same-strand
|
KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
|
4
|
PF10662.11
|
1.0
|
2
|
2426.5
|
same-strand
|
Ethanolamine utilisation - propanediol utilisation
|
5
|
PF07650.19
|
1.0
|
2
|
1969.0
|
same-strand
|
KH domain
|
6
|
PF00071.24
|
1.0
|
2
|
1969.0
|
same-strand
|
Ras family
|
7
|
PF08541.12
|
1.0
|
2
|
879.0
|
same-strand
|
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
|
8
|
PF08545.12
|
1.0
|
2
|
879.0
|
same-strand
|
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
|
9
|
PF01783.25
|
1.0
|
2
|
592.0
|
same-strand
|
Ribosomal L32p protein family
|
10
|
PF02620.19
|
1.0
|
2
|
42.5
|
same-strand
|
Large ribosomal RNA subunit accumulation protein YceD
|
++ More..