* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048436.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04055.23
|
1.0
|
3
|
4262
|
same-strand
|
Radical SAM superfamily
|
2
|
PF13672.8
|
1.0
|
3
|
3496
|
same-strand
|
Protein phosphatase 2C
|
3
|
PF07228.14
|
0.67
|
2
|
3695.0
|
same-strand
|
Stage II sporulation protein E (SpoIIE)
|
4
|
PF00069.27
|
1.0
|
3
|
1617
|
same-strand
|
Protein kinase domain
|
5
|
PF07714.19
|
1.0
|
3
|
1617
|
same-strand
|
Protein tyrosine and serine/threonine kinase
|
6
|
PF03793.21
|
1.0
|
3
|
1617
|
same-strand
|
PASTA domain
|
7
|
PF03193.18
|
1.0
|
3
|
726
|
same-strand
|
RsgA GTPase
|
8
|
PF16745.7
|
1.0
|
3
|
726
|
same-strand
|
RsgA N-terminal domain
|
9
|
PF04263.18
|
0.67
|
2
|
155.0
|
same-strand
|
Thiamin pyrophosphokinase, catalytic domain
|
10
|
PF12673.9
|
1.0
|
3
|
121
|
same-strand
|
Domain of unknown function (DUF3794)
|
11
|
PF01476.22
|
0.67
|
2
|
134.5
|
same-strand
|
LysM domain
|
++ More..