Protein Information |
Information Type | Description |
---|---|
Protein name | EXP03600 |
NCBI Accession ID | |
Organism | Faecalibacterium,Ruminococcus,Anaerococcus,Lachnoclostridium,Hungatella,Flavonifractor,Coprococcus,Butyricicoccus |
Left | |
Right | |
Strand | |
Nucleotide Sequence | ATGAACTTTCATCTGACTGACAAACGGGTAAAAAGACTCCGCTCTGCACAATCCGAACCGGTGAAACATTGTGCAGAGCTGCGCGGCTGA |
Sequence | MNFHLTDKRVKRLRSAQSEPVKHCAELRG |
Source of smORF | Metagenomic Ribo-seq |
Function | |
Pubmed ID | 32601270 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 29 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 318781 | 318870 | + | NZ_CP048436.1 | Flavonifractor plautii |
2 | 2231700 | 2231789 | + | NZ_LT635479.1 | Lachnoclostridium phocaeense |
3 | 837064 | 837153 | - | NZ_CP048649.1 | Aminipila butyrica |
4 | 2869519 | 2869611 | - | NZ_CP039126.1 | Blautia producta |
5 | 3000039 | 3000137 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00005.29 | 0.6 | 3 | 282.5 | same-strand | ABC transporter |
2 | PF12848.9 | 0.6 | 3 | 228 | same-strand | ABC transporter |